Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00581 ATGGACAGGCTCATAAGGTTAGAGCCATCAAATACAGTCATAATCAGAGTAGAACCAGGCCAAAAGTGGCAAGGCAAAATCACCTTACACAACGTTATGCACACAATGCCAGTAGCCTTCTGGCTTCAACCCCTCATCAAAGCCCGTTACGTAGTCAAACCCCACTCAGGTATCATCTCCCCCTTAGCTACACTCACCCTAGAAATCACCTATCATATACCCTCCACCACCACCCTCCCCCATTCCTTCCCCCACTCCAACGACTCCTTCCTCCTACACAGCGTCTTGGTCCCCGGCGCCGCCATCAGGGAACCCTCCTCCATGTTCGACGCCGTCCCCTCCGACTGGTTCAAGAAAAAGCAAGTCTTCATTGACAGCGGCATAAAGGTCTTCTTTTTAGGGTCACACATTCTGGCCCAGTTGGTCTCGCTCGGGGAAAATAATGAGGTCAGGGAAGCCCTAGAGAGAAGCGACCCTTCATGGAGGATTGTGAACAGCACCGACCCACGTGGCAACACGTTGCTCCACTTGGCGATCGCGCAGGGAAGACCTGATCTCGTTCAACTGCTTCTGGAGTTCGAGGCTGATACCGAGGCAACGAACCGTTCTGGGTTGACCCCACTGGAGGCTGCTGCATCGTGTAACGAAACATTGATCGTGGAGCTTCTTCTGGCCCGCAGGGCCAACACGGAGCGAGCCGAATGGGCCGTGTTCGGGCCGATTCATCACGCGGCTAGAGGAGGACACGTGGAGGTTCTGAGACTGCTCTTGCTCAAAGGCGGCAAAGTGGACTCGCTCACGAAAGATGGCAACACTGCTTTGCACGTTGCGGTTGAGGAGCGTAGAAGAGACTGTGTTAGACTCCTTCTAGCCAACGGTGCCAGAACTGACCTTAAGAACACAAGAGAAGGTGACACCCCTTTGCACATGGCAGCAGCAGCAGGAGACGAGAGCATGGTGAAGCTTCTCCTGCAAAAGGGCCGTGCCAACAAAGACATTCGAAACGCGCAAGGCAAAACCGCCTACGACGTCGCAGTGGAGAACGGCCACGAGCGCCTCTTCGACGCTCTGAGCCTGGGCGACAAGCTGTGCGCGGCTGCAAAGAAAGGCGAAGTGAGAACCATCCAGAAGCTTCTGGAGAAGGGCGCGGACCTCAACGGGAGGGACCAGCACGGTTGGACCGCGCTGCACCGAGCCTCGTTCAAAGGGCGAATGGACGTGGTGAAGGTTCTGGTGGAGAGAGGGGTGGAGGTGGACGCGAAGGACGAAGAGGGGTACACGGCACTGCACTGTGCGGCGGAGGCGGGGCATGCCGACGTGACGGAGTTTTTGGTGAAGAAAGGTGCGGATGTTGAGGCGAGGACCAGGAAGGGTGTGAACGCGTTGCAGATAACAGAGTCGTTGAACTACGTGGGGATCACGAGGGTTCTTGTTAACGGTGGGGCTAGTAGGGAAAATTCTGATAAAGTGGCTGCGTTTGGTGCAATTGCGTTTGGGAGTAAGATAACGGAAGTGAAGAAGAGGAGGAGTGGTGAAAGACGTAATAACAGATTGTTGAATAATGGTGCTGGTTTTGGTCGTTCAGTGGCTCTGGCTGTGCTGTAA 1605 0.5502 MDRLIRLEPSNTVIIRVEPGQKWQGKITLHNVMHTMPVAFWLQPLIKARYVVKPHSGIISPLATLTLEITYHIPSTTTLPHSFPHSNDSFLLHSVLVPGAAIREPSSMFDAVPSDWFKKKQVFIDSGIKVFFLGSHILAQLVSLGENNEVREALERSDPSWRIVNSTDPRGNTLLHLAIAQGRPDLVQLLLEFEADTEATNRSGLTPLEAAASCNETLIVELLLARRANTERAEWAVFGPIHHAARGGHVEVLRLLLLKGGKVDSLTKDGNTALHVAVEERRRDCVRLLLANGARTDLKNTREGDTPLHMAAAAGDESMVKLLLQKGRANKDIRNAQGKTAYDVAVENGHERLFDALSLGDKLCAAAKKGEVRTIQKLLEKGADLNGRDQHGWTALHRASFKGRMDVVKVLVERGVEVDAKDEEGYTALHCAAEAGHADVTEFLVKKGADVEARTRKGVNALQITESLNYVGITRVLVNGGASRENSDKVAAFGAIAFGSKITEVKKRRSGERRNNRLLNNGAGFGRSVALAVL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00581 534 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Phac4g00581 534 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Phac4g00581 534 ProSiteProfiles Ankyrin repeat region circular profile. 269 300 - -
Phac4g00581 534 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Phac4g00581 534 SUPERFAMILY Ankyrin repeat 164 489 IPR036770 -
Phac4g00581 534 ProSiteProfiles Ankyrin repeat profile. 424 456 IPR002110 GO:0005515
Phac4g00581 534 PRINTS Ankyrin repeat signature 304 319 IPR002110 GO:0005515
Phac4g00581 534 PRINTS Ankyrin repeat signature 440 454 IPR002110 GO:0005515
Phac4g00581 534 ProSiteProfiles Ankyrin repeat profile. 240 268 IPR002110 GO:0005515
Phac4g00581 534 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Phac4g00581 534 ProSiteProfiles Ankyrin repeat region circular profile. 391 423 - -
Phac4g00581 534 Gene3D - 131 233 IPR036770 -
Phac4g00581 534 Pfam Ankyrin repeats (3 copies) 364 454 IPR002110 GO:0005515
Phac4g00581 534 Pfam Ankyrin repeats (3 copies) 240 299 IPR002110 GO:0005515
Phac4g00581 534 ProSiteProfiles Ankyrin repeat region circular profile. 303 327 - -
Phac4g00581 534 SMART ANK_2a 424 453 IPR002110 GO:0005515
Phac4g00581 534 SMART ANK_2a 303 333 IPR002110 GO:0005515
Phac4g00581 534 SMART ANK_2a 269 298 IPR002110 GO:0005515
Phac4g00581 534 SMART ANK_2a 457 486 IPR002110 GO:0005515
Phac4g00581 534 SMART ANK_2a 391 420 IPR002110 GO:0005515
Phac4g00581 534 SMART ANK_2a 170 199 IPR002110 GO:0005515
Phac4g00581 534 SMART ANK_2a 203 232 IPR002110 GO:0005515
Phac4g00581 534 SMART ANK_2a 236 265 IPR002110 GO:0005515
Phac4g00581 534 SMART ANK_2a 337 387 IPR002110 GO:0005515
Phac4g00581 534 Gene3D - 359 496 IPR036770 -
Phac4g00581 534 PANTHER MOLTING PROTEIN MLT-4 240 489 - -
Phac4g00581 534 Gene3D Immunoglobulins 1 130 IPR013783 -
Phac4g00581 534 Gene3D - 234 358 IPR036770 -
Phac4g00581 534 ProSiteProfiles Ankyrin repeat region circular profile. 424 456 - -
Phac4g00581 534 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 133 IPR000535 -
Phac4g00581 534 ProSiteProfiles Ankyrin repeat region circular profile. 240 264 - -
Phac4g00581 534 ProSiteProfiles Ankyrin repeat profile. 363 390 IPR002110 GO:0005515
Phac4g00581 534 ProSiteProfiles Ankyrin repeat region circular profile. 170 202 - -
Phac4g00581 534 Pfam Ankyrin repeats (many copies) 301 345 IPR002110 GO:0005515
Phac4g00581 534 Pfam Ankyrin repeats (many copies) 164 209 IPR002110 GO:0005515
Phac4g00581 534 ProSiteProfiles Ankyrin repeat profile. 303 327 IPR002110 GO:0005515
Phac4g00581 534 SUPERFAMILY PapD-like 2 141 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00581 Phac-Chr4 6920697 6922645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00581 357 467 Ion Channels AT4G32500 30.631 2.27e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00581 - - gmx:100782444 821.617