Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00545 ATGGAAGCAGAAGAGCACTTTCAACTTCCTCATCTATCTCACGTTGCAAATTCTCCGGTTCAAGGCATGGAAAACGTGGTGGCAACGGTTAGCGGTTACCACGGCTCCGAGCGGTTCGATCTCATCAAGCTGATTTCATATGCCGGCGCCAATTACGTTGGCACAATGTCAAAATCGATAACGCATCTGGTGTGCTGGAAATTTGAAGGAAAGAAATATGATATTGCGTTGAAGTTTAGAATACCTGTAGTGAACCACCAATGGATTGAGGACTGCATAAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAGAGTGGACATGAAGTAGGGCGATTGTTACTGGAAGTTCCCCACACTGTTCGAGATAGTAGGTTGACAAAGAAAAAATTCGTCAGTGACAAGTTACATGATACTGGATCTGAAAGGCAAGAAACTAACTTCGGTTCTGGAATTTCAAGAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGATGAGTCAAGTTCATATTCGTCTAGACTGTCAAGGAAAGGAAAAAGGAACATCTACAATGCTAAGGGAGACAGGACTGTAGCTGGACCTTCTCGTAAAGGAAGAAGACTTACCAGAAATCTTGTTGATGAAGTTGTGTGGGCTCCTTCAATTTTGGATTTAAGCCCAGATAATCCCCTTTTTAGAATGGATAGACTGCAAACAGAAGCTGAAGCTACCTCTAGCCTTTCTGGTGGTGTCAGTAGTAACATTATTCTACAAAATAGTGAAGGATCTAATGCTGGATTAAGTAATGAAAGTAGAATAATCAATGGTGGATCAGATGATATTGAACAGATCAAAGATTCAAGTCATATATCTGCTCCTAGAAATTCAACTTTGTTTGTAGAAGATACCCTACCTGTGCCACAAACATCAATAGATTTATGTTCCAGTGATGATGAAAAGTTCATGGACAGTGATCAGGTTGAAAATGGTGCTGGCTTGCCTACTTCAACCGAGATGTCATGCGTTATATGTTTCACAGATTTCAGCACAACTCGGGGGATTCTGCCGTGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTGATCACAGGACTTCAATGAGAAAAATGCCAACCTGCCCTTTGTGCAAGGAAAGTTTTGTGATGATTAAGAAAGTCGAGCATGCAGCCACAGCTGATCAAAAAGTATACACTCAGACAATCCCATGTAACCATTCATCCTCAGATATTTTTATCCCCATGGATCAAGAATTACGGCATACTATCTTTGAGTCTTCACAGAGTGGAGCTTGTGTAATTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGTGATATTTGCCAAATTCGAAAGATCCATTCTTATTGCATGGACCCTCCTCTACGGCCATGGACATGCAATCATTGCAAGGAACTTAGGATGCTTTATCGCTCTAATCACTCCTATTAG 1476 0.414 MEAEEHFQLPHLSHVANSPVQGMENVVATVSGYHGSERFDLIKLISYAGANYVGTMSKSITHLVCWKFEGKKYDIALKFRIPVVNHQWIEDCIKEGRRVPEDSYTLQSGHEVGRLLLEVPHTVRDSRLTKKKFVSDKLHDTGSERQETNFGSGISRTYVLEDSCLMKKHDESSSYSSRLSRKGKRNIYNAKGDRTVAGPSRKGRRLTRNLVDEVVWAPSILDLSPDNPLFRMDRLQTEAEATSSLSGGVSSNIILQNSEGSNAGLSNESRIINGGSDDIEQIKDSSHISAPRNSTLFVEDTLPVPQTSIDLCSSDDEKFMDSDQVENGAGLPTSTEMSCVICFTDFSTTRGILPCGHRFCFPCIQSWVDHRTSMRKMPTCPLCKESFVMIKKVEHAATADQKVYTQTIPCNHSSSDIFIPMDQELRHTIFESSQSGACVICRGREPEDLLESCDICQIRKIHSYCMDPPLRPWTCNHCKELRMLYRSNHSY* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00545 491 Gene3D BRCT domain 19 111 IPR036420 -
Phac4g00545 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 405 IPR013083 -
Phac4g00545 491 SMART BRCT_7 20 96 IPR001357 -
Phac4g00545 491 PANTHER F5A8.9 PROTEIN 152 488 - -
Phac4g00545 491 SMART ring_2 339 383 IPR001841 -
Phac4g00545 491 ProSiteProfiles Zinc finger RING-type profile. 339 384 IPR001841 -
Phac4g00545 491 ProSiteProfiles BRCT domain profile. 15 106 IPR001357 -
Phac4g00545 491 SUPERFAMILY FYVE/PHD zinc finger 434 481 IPR011011 -
Phac4g00545 491 SUPERFAMILY BRCT domain 18 107 IPR036420 -
Phac4g00545 491 SUPERFAMILY RING/U-box 338 391 - -
Phac4g00545 491 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 IPR018957 GO:0046872
Phac4g00545 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 490 IPR013083 -
Phac4g00545 491 Pfam twin BRCT domain 26 88 IPR001357 -
Phac4g00545 491 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
Phac4g00545 491 MobiDBLite consensus disorder prediction 171 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00545 Phac-Chr4 6382168 6387894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00545 56 112 Core DNA Replication Machinery Family AT4G02110 46.552 9.79e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00545 - - gmx:100815034 793.497