LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac4g00521	ATGTTGAAGGAAGGCACCAACAACGTTGGTGACAGCTCCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCGCCATGCATAGTGTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTCCATGCAGCTAACCGCGTGGCCTCAAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTTTGCAAAGTTGACGCAGCTTCTCTTTGTTCTTCTTGTGATGCTGAGATTCACTCAGCAAACCCTCTAGCCAGCCGCCACCACCGTTTCCCCGTTCTCCCCATCTTGGGTCCCCTCTTGGGAGAACCAGATCACGAACCGGAACACAGATTCGTGAACGTGGTGGAAGAGGAAGAGGAAGAGTTTTCTTATGAGTATGACGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAAGGCAACGAAGAGGAGGAGAATGGTTTTATGTACAGTAATGAATATTTGGAGAACCTTGTGGATTGTAACTCGTGCGGTCACAATAATAACCAGTTTAGCAACGTTTTTCAGCACCAACAGAACTACAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCTGCAACAATCGCAGCATTTTCAACCGGGTTTGGAGTTTGACTCATCAAAAGCTGGTTTCAGTTACGATGGTTCTCTTAGCCAAAGTGTATCAGTTTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATCTCAGTGTCGTATTCAAAGTCACCAATAGGGACAAGTGAACTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCAATGGACAGAGAGGCCAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACTAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGACCAAATGCTCTCCAAAACACTATTCAATGAAGTTGGTGGTACAATTTTCCATCTTTCCAGGAATGGAAAGAAAAGAAGTTATCAATAG	1101	0.4668	MLKEGTNNVGDSSSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKVDAASLCSSCDAEIHSANPLASRHHRFPVLPILGPLLGEPDHEPEHRFVNVVEEEEEEFSYEYDDEIEAASWLLPHPVKGNEEEENGFMYSNEYLENLVDCNSCGHNNNQFSNVFQHQQNYNTVPQNYAVVPVQVLQQSQHFQPGLEFDSSKAGFSYDGSLSQSVSVSSMEVGVVPESTISDISVSYSKSPIGTSELFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSKTLFNEVGGTIFHLSRNGKKRSYQ*	367

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phac4g00521	366	ProSiteProfiles	CCT domain profile.	288	330	IPR010402	GO:0005515
Phac4g00521	366	Pfam	B-box zinc finger	60	101	IPR000315	GO:0008270
Phac4g00521	366	CDD	Bbox1_BBX-like	19	62	-	-
Phac4g00521	366	Pfam	CCT motif	288	330	IPR010402	GO:0005515
Phac4g00521	366	ProSiteProfiles	Zinc finger B-box type profile.	58	105	IPR000315	GO:0008270
Phac4g00521	366	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 4	20	343	IPR045281	GO:0009909
Phac4g00521	366	ProSiteProfiles	Zinc finger B-box type profile.	15	62	IPR000315	GO:0008270
Phac4g00521	366	SMART	bboxneu5	63	105	IPR000315	GO:0008270
Phac4g00521	366	SMART	bboxneu5	15	62	IPR000315	GO:0008270
Phac4g00521	366	CDD	Bbox1_BBX-like	62	105	-	-

Showing 1 to 10 of 10 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac4g00521	Phac-Chr4	6128181	6130472	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac4g00521	1	353	C2C2-CO-like Transcription Factor Family	AT3G02380	52.547	1.72e-114	335

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-CO-like	Phac4g00521		CCT	1.5e-17	CL0281

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac4g00521	-		K12135	gmx:100782635	566.614

Showing 1 to 1 of 1 entries

Previous1Next