Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00512 ATGTCTCGTCATCATCATCTTCACAACCATCATTCTCCCAATCCCTTCGCGTCCCTCTCCACTCACTCCGATTCCGATTCCGATTCGGACTCAGTGAGTTGCTTCGTCGCCGATCTCTTCGAGACTCGCTCGCGACTCTGTTCCTGCGACGACACTGACGTAAACCCTTTCTCCGACGCCGTCTGCGACGTCCATCGCTCCGAGCACGTGCTAGGGTTAGGGTTAGGGTTAGGGTTAGGGATTGGCGTCGAAATTGATTCCCAAACGCAGGACAACGATGAGACTAATCACGATAGTGTTTTCAACTTCCCGGTGGGGGATGGTTGGGGAGGGCTTAGAGTTGAAGGGTTCGGTTCGGATTCGGATGATTCGAATGGCGAGGAGGGTGGGGTTCGTGATGAGGGTGGTGGGTTTGACGATTTCGATGTTCGGTTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACACTGAATGAGGGTTTTGAATGGGAGGAAGTTGAGGAGAGGGTGAATGATAGGGAGGATTCGGGTTTGGTGGTTGATGAAGTTGAAATTGAAGATGATGTTGATGGTGATTCGGTGGGGTTTACTAATGCCGAGGAGGAGGAGGAGGAAGATGGAGGTGAAGAGGCGCTGAGGTACCTTGAGTGGGAGATTCTCTTGGCGGTTAACAATTCGGAGAGGAATGTTAACAATGGTGGTGGTTTGGAGCATGAGGGCATTGCTGGTGCTGCTGATTTGCTGACAATCCAAGATGGTTATGTATATGCGGCGGAGTATGATGTTTTATTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGAAGTCCTCCCGCTGCGAAGAGTGTTGTGGAGAGTCTCCCATTGGTGGAGTTGTCGAAGGAGGAGCTGTTGCAGGGGAAGAACTTGGCGTGCGCCATTTGCAAGGATGAGATTTTGTTGGAGGAGAAGGTCAGGAGGCTGCCTTGCTCTCATTGTTACCATGGGGACTGCATTTTGCCATGGTTGGAAATTCGCAACACATGCCCAGTTTGTCGGTTTGAGCTTCCCACAGATGATCCGGACTATGAGCAGAGGAAGGTCCACAGGGCTGCTCATGATCTGTTGGAGCTTGCAACAGCAGGGATGCAATTTTGA 1143 0.5127 MSRHHHLHNHHSPNPFASLSTHSDSDSDSDSVSCFVADLFETRSRLCSCDDTDVNPFSDAVCDVHRSEHVLGLGLGLGLGIGVEIDSQTQDNDETNHDSVFNFPVGDGWGGLRVEGFGSDSDDSNGEEGGVRDEGGGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNDREDSGLVVDEVEIEDDVDGDSVGFTNAEEEEEEDGGEEALRYLEWEILLAVNNSERNVNNGGGLEHEGIAGAADLLTIQDGYVYAAEYDVLFGQFLENESALKGSPPAAKSVVESLPLVELSKEELLQGKNLACAICKDEILLEEKVRRLPCSHCYHGDCILPWLEIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELATAGMQF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00512 380 FunFam E3 ubiquitin-protein ligase RING1-like 267 354 - -
Phac4g00512 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 191 352 - -
Phac4g00512 380 MobiDBLite consensus disorder prediction 114 135 - -
Phac4g00512 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 354 IPR013083 -
Phac4g00512 380 ProSiteProfiles Zinc finger RING-type profile. 307 348 IPR001841 -
Phac4g00512 380 Pfam Ring finger domain 306 348 IPR001841 -
Phac4g00512 380 MobiDBLite consensus disorder prediction 1 23 - -
Phac4g00512 380 SMART ring_2 307 347 IPR001841 -
Phac4g00512 380 SUPERFAMILY RING/U-box 294 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00512 Phac-Chr4 5957752 5959597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00512 104 362 C3H Transcription Factor Family AT3G02340 39.860 2.05e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00512 - - vra:106778727 610.912