Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00476 ATGGGGAGAGGGAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGCCGCCAAGTCACCTTCTCCAAAAGGAGAACCGGTCTGCGCAAGAAAGCCAATGAAATCTCTGTGCTCTGTGATGCTCAAGTGGCACTGATTGTCTTCAATGCCAAAGGGAAGCTCTTCGAGTATTCGTCTGAATCCAGACTTTGCAAATCTATCTAA 204 0.4755 MGRGRVQLKQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSSESRLCKSI* 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00476 67 Gene3D - 13 67 IPR036879 GO:0003677|GO:0046983
Phac4g00476 67 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Phac4g00476 67 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac4g00476 67 FunFam MADS-box transcription factor MADS-MC 13 67 - -
Phac4g00476 67 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac4g00476 67 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac4g00476 67 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac4g00476 67 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac4g00476 67 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Phac4g00476 67 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac4g00476 67 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00476 Phac-Chr4 5666031 5666795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00476 1 61 MADS-box Gene Family AT1G26310 85.246 1.37e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac4g00476 SRF-TF 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00476 K09264 - gmx:100820188 119.783