Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00475 ATGGGGAGGGGAAGAGTGGAACTCAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTTTGTAGCAGTTCAAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGCCAAAGAGCTTGAGAGCAGCTATCGTGAGTACTTGAAGCTGAAAGGAAGATTTGAATCTCTTCAGAGGACACAAAGAAACCTTCTAGGTGAAGACTTGGGCCCATTAAATACCAAAGAACTTGAGCAGCTTGAGAGGCAACTAGATTCATCTCTCAAGCAAGTGAGGTCGACAAAGACTCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGAGCTTTAACCATGAAGCTGGATGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGCGATCAAAGTATGCCTTATGGTACTCCGAATGCACACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAATCCAACATTGCAGATAGGTTCCGACTACAGGTACAACCCTGAAGCCTCAGATCAGCTAACTGGGACAACTCAAGCACAACAAGTGAACGGTTTTATTCCTGGATGGATGCTTTGA 744 0.4435 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRALTMKLDEINSRNQYRQTWEAGDQSMPYGTPNAHSQGFFQPLECNPTLQIGSDYRYNPEASDQLTGTTQAQQVNGFIPGWML* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00475 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phac4g00475 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Phac4g00475 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac4g00475 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac4g00475 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac4g00475 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac4g00475 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac4g00475 247 Coils Coil 124 144 - -
Phac4g00475 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac4g00475 247 FunFam MADS-box transcription factor 1 13 87 - -
Phac4g00475 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac4g00475 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac4g00475 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac4g00475 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Phac4g00475 247 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00475 Phac-Chr4 5633341 5639711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00475 1 247 MADS-box Gene Family AT5G15800 74.809 1.13e-126 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac4g00475 K-box 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00475 K09264 - gmx:100785322 462.996