Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00473 ATGGGGAGGGGAAGAGTGGAACTCAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTTTGTAGCAGTTCAAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGCCAAAGAGCTTGAGCAGAGCAGCTATCGTGAGTACTTGAAGCTGAAAGGAAGATTTGAATCTCTTCAGAGGACACAAAGAAACCTTCTAGGTGAAGACTTGGGCCCATTAAATACCAAAGAACTTGAGCAGCTTGAGAGGCAACTAGATTCATCTCTCAAGCAAGTGAGGTCGACAAAGACTCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGAGCTTTAACCATGAAGCTGGATGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGCGATCAAAGTATGCCTTATGGTACTCCGAATGCACACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAATCCAACATTGCAGATAGGTTCCGACTACAGGTACAACCCTGAAGCCTCAGATCAGCTAACTGGGACAACTCAAGCACAACAAGTGAACGGTTTTATTCCTGGATGGATGCTTTGA 747 0.4444 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRALTMKLDEINSRNQYRQTWEAGDQSMPYGTPNAHSQGFFQPLECNPTLQIGSDYRYNPEASDQLTGTTQAQQVNGFIPGWML* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00473 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phac4g00473 248 Coils Coil 125 145 - -
Phac4g00473 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Phac4g00473 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Phac4g00473 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac4g00473 248 FunFam MADS-box transcription factor 1 13 88 - -
Phac4g00473 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac4g00473 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Phac4g00473 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac4g00473 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac4g00473 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac4g00473 248 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac4g00473 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac4g00473 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac4g00473 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00473 Phac-Chr4 5633341 5639711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00473 1 248 MADS-box Gene Family AT5G15800 74.525 7.44e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac4g00473 K-box 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00473 K09264 - gmx:100785322 458.373