Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00380 ATGGCTGCGACAAAACCCCAACGCACTCCGCAGGAAGTGGAGGACATTATCATCCGCAAAATCTTCCTCGTCTCCATAATCGAAAACACGAACACAAGCGCAACAGATTCAAGAATCGTGTATTTGGAACTAACCGGTGCGGAGATTCTCAGCGAAGGGAAGGAGCTTCGCCTGTCGCGGGATTCAATGGAGAGGGTTTTGATCGACCGTCTCTCCGGAGACTTTTCTACCTCCACCGGAGAGGCCAGCGAGTCACCGTTCCAGTACCTCATCGGATGCTACCACCGGGCGCACGAGGAGGGGAAGAAAATTGCGAACATGAAGGACAAGAGCTTGCGCTCGGAGATGGAGGCGGTGGTGAGGCAGGCCAAGAAGCTATGTGTCAACTACTGCCGGATTCATTTAGCCAATCCTGAGCTCTTTCCGAGCCGGAATTCGGGGGGTTCCGACGCCAATTCACCTCTGCTGCCGCTGATTTTTGCGGAGGTGGGCGGCGGAAGCGTGTTCGGGGGCGGCGGTGGAGGGGCCAAGAGCCCGCCGGGGTTTCTGGAGGAGTTTTTCAGGGACCCGGACTTTGACAGCTTGGACCTGATTCTGAAGGGGTTGTATGAGGAATTGAGAGGGAGCGTGATGAATGTGTCTGCTCTGGGGAATTTTCAGGATTCTCTGAGGGCTTTGTTGTACTTGGTTAGGTTTCCCTTTGGTGCCAAGTCGCTTGTGAATCACGAGTGGTGGATTCCCAAAGGGGTTTATGTGAACGGCCGTGCTATTGAAATGACCAGCATTTTGGGTCCCTTTTTCCATATTAGTGCTCTTCCTGATCAGGCCTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCCGCTGATTTGTTATCTTCATTTTCCACTATCAAAACTGTCATGAACAACTTATATGATGGACTAGCTGAAGTACTGCTCATCCTTCTTAAAAGTACAGATACTCGTGAAAGGGTACTTGAGTATCTTGCAGAGGTGATCAATATAAACGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCACCTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTTTGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTACACTACTCAAATCGCTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTGCTGAATGGCTTAATAGTAAAAGTCCAGCTAAGACTGGGGCAACCAATCAATATAATGATGATCAGAAGCGGTTACAGCAATCCCAAGAGGCCAGTAGTTCCGGTAGTAATAATGCTGGTGAGCTCTCAAATGAAAATTCTGCACGAGCTGAAAAGACGAAATATTCATTTATTTGCGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACATTTAGTTCAGGATATTTCTAGGTGTGAAGATGCTCTCTCCACACTTAAAGCCATGCAGGAGCGGTCACCCACCCCTCAGGCAGAATTGGATATAAATCGACTTGAGAAAGAAATGGAGTTGTATTCACAGGAAAAACTATGTTATGAAGCTCAGATTTTGAGGGATAACACACTTATTCAAAAGGCACTTTCCCTCTATCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTGGGTGGTTTCAAGATGCCTCTACCACCAACTTGCCCTATGGAATTTGCTACCATGCCTGAACATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCTCGGATTCCGAAGGCCTTAGATGGAGTTGTGCTGGATGAATTTATGAATTTCATAATTATGTTCATGGCCAGCCCTGAATTTATAAAAAACCCATACCTGAGAGCAAAGATGGTTGAAGTCCTGAACTGCTGGATGCCTCGTAGGAGTGGCTCAACTGCGGCAGCCACTTTATTTGAAGGCCACCAACTCTCTCTCGAGTATCTCGTGAGGAATCTTCTTAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGCCATAATATTGCGGAACTCCTCGAATACCTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAGGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTGAACTTTCTGGTCAATGATAGTATTTATCTTCTAGATGAAAGTCTGAAAAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACGGTTGAGTGGGAGCAACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGAATAGATATGAAGTTGGCAAACGAAGATGTCAGTATGCTTGCATTTACTTCAGAACAGATTACTGCTCCGTTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTCCTGCTGCAATTGGTGGGTCCCCAAAGAAAATCACTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTACTAAAACAGATTGTGCACATATATGTTCATCTGGCTAGGGGTGACACGAATTCCATCTTCCCATCTGTGATCTCAAGGGATGGTCGATCATACAACGATCAGTTGTTTAGTGCTGCAGCCGATGTCCTTCGCAGAATTGGTGAGGATGGCAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCGGAGGCAATGGATGCTGAAGCTACTCTAGGGGAAATACCTGAGGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATTTTGCCTTCTTCAAAGACCACGGTTGATCGTCCTGTGATTCAGAGGCATCTTCTTAGTGATAGTACTGATCCGTTCAACCGTTCTCATCTTACTGCGGATATGTTGATTCCCAATGATGAGCTAAAAGCAAGAATTGAGGAGTTTGTGAGGTCTCAAGAAATGAAAAAACACGGTGAAGCCCTAAACCTACAGACTAACAAGGACACAATTCAGACTACAAATGGGGAAATGTTGATTGATTAG 3129 0.4471 MAATKPQRTPQEVEDIIIRKIFLVSIIENTNTSATDSRIVYLELTGAEILSEGKELRLSRDSMERVLIDRLSGDFSTSTGEASESPFQYLIGCYHRAHEEGKKIANMKDKSLRSEMEAVVRQAKKLCVNYCRIHLANPELFPSRNSGGSDANSPLLPLIFAEVGGGSVFGGGGGGAKSPPGFLEEFFRDPDFDSLDLILKGLYEELRGSVMNVSALGNFQDSLRALLYLVRFPFGAKSLVNHEWWIPKGVYVNGRAIEMTSILGPFFHISALPDQAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSTDTRERVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLKLSGLTALHASSEEVAEWLNSKSPAKTGATNQYNDDQKRLQQSQEASSSGSNNAGELSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQERSPTPQAELDINRLEKEMELYSQEKLCYEAQILRDNTLIQKALSLYRLMIVWLVGLVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTAAATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLVNDSIYLLDESLKKILELKELEAEMSNTVEWEQRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPSVISRDGRSYNDQLFSAAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPEEFLDPIQYTLMKDPVILPSSKTTVDRPVIQRHLLSDSTDPFNRSHLTADMLIPNDELKARIEEFVRSQEMKKHGEALNLQTNKDTIQTTNGEMLID* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00380 1042 Pfam U-box domain 944 1015 IPR003613 GO:0004842|GO:0016567
Phac4g00380 1042 SMART Ubox_2 947 1010 IPR003613 GO:0004842|GO:0016567
Phac4g00380 1042 Pfam Ubiquitin elongating factor core 263 927 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Phac4g00380 1042 Coils Coil 522 549 - -
Phac4g00380 1042 PANTHER UBIQUITINATION FACTOR E4 4 1019 IPR045132 GO:0000151|GO:0030433|GO:0034450
Phac4g00380 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 943 1022 IPR013083 -
Phac4g00380 1042 MobiDBLite consensus disorder prediction 427 461 - -
Phac4g00380 1042 FunFam Ubiquitin conjugation factor e4 a 943 1021 - -
Phac4g00380 1042 ProSiteProfiles U-box domain profile. 943 1017 IPR003613 GO:0004842|GO:0016567
Phac4g00380 1042 SUPERFAMILY RING/U-box 936 1016 - -
Phac4g00380 1042 CDD RING-Ubox_UBE4A 946 1014 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00380 1 1042 U-box Gene Family AT5G15400 75.499 0.0 1627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00380 K10597 - gmx:100806175 1863.2