LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac4g00373	ATGGGTTGCATCAGCTCCAAAAATGTGGTTGCCAAAGCTTATTCTCCATCCCCAACAAGGGTGGAGATTTCAGAGGCGAATCGCTCCTCCAGCAGGGGCCATTCCGGATTGAAGATTTTGGATTCCAAAGCAAATTTGGATAATGAGAGGAACAACAAGTTCAAGAAAAATAGTTCAAAGAAGAGTAATGGGGCCTTTAACTTAAGGCTTGGGTTGGCTCAGAGGAGTGTTGAAGCAGAACAAAATGCTGTTGGTTGGCCTCCATGGCTCACTGCTGTTGCAGCAGAAGCCATTCAAGGGTGGATTCCTCTCAAAGCAGATTCCTTTCAAAAGTTAGAAAAGATTGGTCAAGGTACATATAGTAGTGTGTTTCGAGCTCGTGAAGTTGAAACCGGAAAGATGTTTGCTTTGAAAAAGGTTCGCTTTGACAACTTTCAACCTGAGAGCATTAGGTTTATGGCAAGAGAAATAACGATCCTTCGTAGGCTTGATCACCCAAACATCATGAAATTGGAGGGTATAATCACTTCTCGTCTATCAAATAGCATATATCTTGTATTTGAGTACATGGAGCATGATCTTGCTGGCCTAGTGTCACGTTCTGACATAGTGTTCACTGAATCGCAGATAAAGTGTTATATGAGACAACTTTTAAGTGGACTGGAGCATTGTCATATGCGTGGTATTATGCATAGGGACATCAAGGTATCAAATATCTTATTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATCAGTACAAATAATAAACATCCTTTGACAAGTCGTGTTGTGACTTTGTGGTATCGTCCTCCTGAACTATTGATGGGATCAACCAGCTATGGAGTGTCAGTGGATCTATGGAGTGTTGGTTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGAAGAACTGAGGTTGAACAATTACACAAAATTTTTAAATTGTGTGGTTCTCCACCTGAGGAGTTTTGGAAAAAGACTAAACTTCCTCATGCAACCATGTTCAAGCCTCAAACAAATTATGAAAGCTCTCTTCGAGAAAGATGTGCAGACTTTCCTGCATCTGCTATAAACCTACTTGAGACTTTATTATCCATTGATCCAAGCAATCGAGGAACTTCCTCATCTGCCTTAATGTCTGAGTATTTTAGTGCCAAGCCATACCCTTGTAACCCATCAAACTTGCCAAAATACTCACCCAGCAAAGAAATGGATGTAAAAGTTCAAGAAGACTCATCCAGGAAAAAGATTGAAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGACAACAAAGACGAGTCTCTAGACTTTTGCAAGATCAAAACAATTTGGGTAAATCAAGTTCAAAAGAGGACATGCAAAACTTTTCCCAAAATGGTCATAGAGATGATGGTAAAACACATCTCACAAAAGGAAAAGGAGGAGGCATGTACAAAGAGCATACAAAGTCTGCATTGGGTGCTATGTCAGAGACTTCCCAAATGATGAATGTTGTCAATGGTAATGGATACAGTGTGCCACTACAAGTTCCAGGTTCTACCAATGATTATACATGGGTAAAAAGAAGAAAACAAGATGCATCATCAACTCTATCAGATGGCTCAAGAAGCAAAATTAGTGCACTAGATCCAAACTTTGCCAAAGGAACATATGATTTAACTAACCAAAGGGTTTCAATGGATTTTGATCCCGCTGAATTGATGAATGCTCAGGGTCGAAGGGAACTTGATGCACAACGTGCAATTCGTAAATCAAGGTTTGGAAGAGATAAATGA	1806	0.3987	MGCISSKNVVAKAYSPSPTRVEISEANRSSSRGHSGLKILDSKANLDNERNNKFKKNSSKKSNGAFNLRLGLAQRSVEAEQNAVGWPPWLTAVAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRSDIVFTESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTNNKHPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPASAINLLETLLSIDPSNRGTSSSALMSEYFSAKPYPCNPSNLPKYSPSKEMDVKVQEDSSRKKIEGKMREVATSRRQQRRVSRLLQDQNNLGKSSSKEDMQNFSQNGHRDDGKTHLTKGKGGGMYKEHTKSALGAMSETSQMMNVVNGNGYSVPLQVPGSTNDYTWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTNQRVSMDFDPAELMNAQGRRELDAQRAIRKSRFGRDK*	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac4g00373	601	MobiDBLite	consensus disorder prediction	586	601	-	-
	Phac4g00373	601	ProSiteProfiles	Protein kinase domain profile.	109	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac4g00373	601	MobiDBLite	consensus disorder prediction	406	489	-	-
	Phac4g00373	601	SMART	serkin_6	109	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac4g00373	601	MobiDBLite	consensus disorder prediction	446	465	-	-
	Phac4g00373	601	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	229	241	IPR008271	GO:0004672\|GO:0006468
	Phac4g00373	601	ProSitePatterns	Protein kinases ATP-binding region signature.	115	138	IPR017441	GO:0005524
	Phac4g00373	601	FunFam	probable serine/threonine-protein kinase At1g54610	192	433	-	-
	Phac4g00373	601	CDD	STKc_CDK9_like	109	393	-	-
	Phac4g00373	601	MobiDBLite	consensus disorder prediction	580	601	-	-
	Phac4g00373	601	MobiDBLite	consensus disorder prediction	466	488	-	-
	Phac4g00373	601	SUPERFAMILY	Protein kinase-like (PK-like)	103	400	IPR011009	-
	Phac4g00373	601	MobiDBLite	consensus disorder prediction	413	445	-	-
	Phac4g00373	601	Gene3D	Transferase(Phosphotransferase) domain 1	192	433	-	-
	Phac4g00373	601	Pfam	Protein kinase domain	109	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac4g00373	601	FunFam	probable serine/threonine-protein kinase At1g54610	96	191	-	-
	Phac4g00373	601	Gene3D	Phosphorylase Kinase; domain 1	96	191	-	-
	Phac4g00373	601	PANTHER	CELL DIVISION PROTEIN KINASE	107	398	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac4g00373	Phac-Chr4	4605686	4611381	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac4g00373	101	433	Core Cell Cycle Gene Families	AT5G10270	47.278	5.40e-110	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Phac4g00373		Pkinase	9.8e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac4g00373	-		-	gmx:100790917	952.199