Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00368 ATGGCAAGGAAGAGAAAGGGTGGTGAAGTAGTTGAAGAGAGAGAGATATGTGAGGGAAGCATGGCTTGGGATGAGATGATGAAACAGGCTGCAGCACTTGGAGGAGTCCAAAGAGCCAGGAAGAGGTTTGTTGGGGTGAGGCAAAGGCCATCAGGTAGATGGGTGGCTGAGATCAAAGACACCATTCAGAAGATAAGAGTGTGGTTGGGGACTTTTGACACTGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCTTGCTTAGAGGTGCAAACACAAGGACAAATTTCTGGCCATGTTCTCAATCCTCCACAAGTCCAGCACTTTCCTCAAAAATCACCAATCTCCTCCTTCAGAGGCTTAAAGAAAGGAACAACAACAACAACACCTGCTCCTCCACCTCCACCTCACTTCTCATCAACCACCAACATATGCAACAAGAAGTTGATGCTTATGGTGATGGTTCAACACAATTCTCAATTGACCAATTCACTGATTTTCTCAATGACCCTGAAGATTATAGTGCAAGCAACAGTGACTTCATCAACAACACTGCACAAATTGACTACATTACTAGTAGTTTTGAATCATGTTTGACTGAAAAAGATGGGGGGACAAAAGTGGATGTGCAATACAAAACCAACATTGTGACACCACAGACTTCAAGTAATGACAGCAACTCAGGAGTGGAGGACAGTGAAGAAGAAGGCACTGATTTGGGAGAACAAAGCACTAACTTTGATGTCCATGATTTTAGGTTTCTAGACAACATTGCTCCACCTAGTTACTACTCTCCTTTTGAGATGGCTGAAGAGATGGAGGAGCCTGTGGAGGCAGAGAACTATGGTGGTGATGAGCCTTCAATGCTTAGAGCTGTGATGAAGAGAATGACATATGAGAGGAAGTTCTCAGCCTCTCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGGAAACATGAAAGCAAGAGGATTAACTGATCAATTAAGCAGCCTCCAAATGGCTTGTAGCAAAAACAGACTTAAGAAGAATGAAGAGGTGAAAGAGTACATGGAAGCAATGGATGGAAAACAGGAAGAACACCACCAACAAACAACAACTGACATGGATTCTTCTAGTGTTGATGGTGAACTGTTACTTTGGAATTCACTAGATCTTCCTCCAATTTGCTTTGTTAACTTGCTAGAAAACGGTTCATTCAATTAG 1227 0.4295 MARKRKGGEVVEEREICEGSMAWDEMMKQAAALGGVQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNNNNTCSSTSTSLLINHQHMQQEVDAYGDGSTQFSIDQFTDFLNDPEDYSASNSDFINNTAQIDYITSSFESCLTEKDGGTKVDVQYKTNIVTPQTSSNDSNSGVEDSEEEGTDLGEQSTNFDVHDFRFLDNIAPPSYYSPFEMAEEMEEPVEAENYGGDEPSMLRAVMKRMTYERKFSASLYAFNGIPECLKLKLESGNMKARGLTDQLSSLQMACSKNRLKKNEEVKEYMEAMDGKQEEHHQQTTTDMDSSSVDGELLLWNSLDLPPICFVNLLENGSFN* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00368 408 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Phac4g00368 408 Coils Coil 347 367 - -
Phac4g00368 408 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Phac4g00368 408 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Phac4g00368 408 MobiDBLite consensus disorder prediction 217 244 - -
Phac4g00368 408 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 305 - -
Phac4g00368 408 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Phac4g00368 408 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Phac4g00368 408 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Phac4g00368 408 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Phac4g00368 408 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Phac4g00368 408 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00368 Phac-Chr4 4589417 4590944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00368 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.38e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac4g00368 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00368 K09286 - gmx:100786711 693.345