Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00346 ATGGATGCAATGGAGAATAATAATCACAGAGAGATAATGGCAGAGCAAACGTTTGATTTGCCACCGGGGTTCAGGTTCCATCCAACAGATGAAGAACTCATCACTCATTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGCTCCAGGGCCATTGGAGAGGCTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGTATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTCTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACTAATAGAGCCACTGGTGCTGGTTATTGGAAGGCCACAGGCAAAGACAAAGAGATATACAAGGCAAAGACACTTATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCAAGTGGGGAAAAAACAAACTGGGTCATGCATGAATACAGATTAGAAGATGATCATTCTATGCACAATCCACACAAAAAGGCCATGAATAATTGGGCCATCTGCAGGATTTTTGAGAAGACTAACTGTGGGAAGAAAATGCAGATTTCTGGTTTGGTGAGGTTCACCTCCTTTAGAAAGGACATGCCTTCATTGATGGATTCTTCTCCATACAACACCAGTGAAGCAAAGGCTGTTTTGGGGGAGTCATCACACTTCTCAGATCCAAACCAAAGTGAGGACCTAAGAACACATGATGAACACATAGTTGATAGCCTAGAGACTCTCATGATGGCATCATCATCTTCATATTCTTCAAACCCCTTTGATGTTTCCCCTGCCTCTTGGACTTTTCCCAAATCCTCCCCTACTGTGCCCCACCAATCCCTCCAAGTTGGGAACTCACACTGCTCAGACTATTTCATGGATCAGGAACAGTCCATGTTGGGGATGCTGATTGAAAACCATGGATCAAGTAGTAGCCTCAGAACTCACAGACCACAGGATAAAGACTTTGATGCTGACATCTCCTCTCTCATGTACAATGATGAAATGTTTCAAAGATCATTTGGGAACCAGGAATATTCATCACCTTCTCTAGGACATGTTTACACTAGTGGCCTATGGGGATTCTGA 1065 0.4347 MDAMENNNHREIMAEQTFDLPPGFRFHPTDEELITHYLSQKVLDSCFCSRAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKEIYKAKTLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLEDDHSMHNPHKKAMNNWAICRIFEKTNCGKKMQISGLVRFTSFRKDMPSLMDSSPYNTSEAKAVLGESSHFSDPNQSEDLRTHDEHIVDSLETLMMASSSSYSSNPFDVSPASWTFPKSSPTVPHQSLQVGNSHCSDYFMDQEQSMLGMLIENHGSSSSLRTHRPQDKDFDADISSLMYNDEMFQRSFGNQEYSSPSLGHVYTSGLWGF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00346 354 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Phac4g00346 354 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Phac4g00346 354 FunFam NAC domain-containing protein 100-like 29 174 - -
Phac4g00346 354 Gene3D NAC domain 29 174 IPR036093 GO:0003677|GO:0006355
Phac4g00346 354 SUPERFAMILY NAC domain 15 170 IPR036093 GO:0003677|GO:0006355
Phac4g00346 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00346 Phac-Chr4 4363438 4365382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00346 19 354 NAC Transcription Factor Family AT5G07680 51.032 4.12e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac4g00346 NAM 4.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00346 - - gmx:100785620 597.045