Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00308 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCACGACCACCACCAACTCCACCTACGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTTCCACCCCATCACTTTCAAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCTGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAACTAGGGGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCCCTTGAGAAGAGCTTTGAATTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTTCAACCAAGGCAAATTGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGACTCCCTCAAGGCTCAGAATCAGAAATTACATGCAGAGCTACAGAATCTGAAAAATAGGGACTGCTGTGAAACCAGAACAGTTAGCCTGAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACAGAACACCAGTGATGAACAGCCCTGTGTCTTCTCAGAATGGAAAAAGCCTTCTACCAACTTCCCTTAAGCCAACAAGCATGACTCAACTCCTCCAATGCTCATCAAGATCAGATCTCCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACTGAGCAGCAGCACCAGTTTCATTAA 828 0.4698 MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQNLKNRDCCETRTVSLKKETEGSWSNGSNNSSEINLDRTPVMNSPVSSQNGKSLLPTSLKPTSMTQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00308 275 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Phac4g00308 275 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Phac4g00308 275 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Phac4g00308 275 SMART HOX_1 79 140 IPR001356 GO:0003677
Phac4g00308 275 Gene3D - 73 145 - -
Phac4g00308 275 SUPERFAMILY Homeodomain-like 72 138 IPR009057 -
Phac4g00308 275 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Phac4g00308 275 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Phac4g00308 275 MobiDBLite consensus disorder prediction 190 222 - -
Phac4g00308 275 Coils Coil 128 176 - -
Phac4g00308 275 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Phac4g00308 275 CDD homeodomain 81 137 IPR001356 GO:0003677
Phac4g00308 275 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Phac4g00308 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 267 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00308 Phac-Chr4 3892759 3896074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00308 1 269 Homeobox Transcription Factor Family AT3G01220 52.347 4.92e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac4g00308 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00308 K09338 - gmx:100790803 481.87