Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00294 ATGTCCGACGGCCATCTCTTCAACAACATCACCCTGGGAGGCCGCGGAGGCACCAATCCAGGGCAGATAAGGATATATTCTGGAGGAATTATATGGAAGAGACAGGGTGGTGGTAAATTAATTGAAGTTGATAAATCTGACATAATGGGGGTGACATGGATGAAGGTTCCAAGAACTAACCAACTTGGGGTTCAAATCAAAGATGGATTGTACTACAAGTTCACAGGATTTCGTGACCAGGATGTTGCAAGTTTGACCAATTTTTTTCAAAACACCTGTGGAATATCAGTGGAGGAGAAACAGCTTTCTGTTAGCGGGCGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTTATGGTTGGTTCAAAGCAAGCTTTTGAAGTGTCTTTAGCAGATGTCTCTCAAACACAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCACGTGGATGATACAACAGGAGCTAATGAGAAAGATTCATTAATGGAGATAAGTTTCCATATACCAAATTCCAACACCCAGTTTGTCGGTGATGAAAATCATCCTCCTGCTCAGGTTTTCCGTGACAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGACGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGGGGACGATACAGTGTTGAGCTACACATGTCATTCTTGCGGCTTCAGGGACAAGCTAATGATTTCAAAATTCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACACACCTTTGTTATCATTAGCCTTGACCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTCGAAACTGATTATGTTGTTCAAAGTGAATTGGCAATAACTGAAGATCTTTATAACTCAAAGTATAAGGATAAATTGGAGCTGTCTTATAAGGGACTTATTCATGAAGTGTTTACCACAATATTACGCGGCTTGTCAGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTAAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTCTTCACGAAGAGATTGACTATGTGGAGTTTGAGAGGCATGCTGCTGGTGGCTCCAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTATTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTACGAATTTATCAGTTCAAAGGGCTTGAAAATTATGAATTTAGGAGATGCCCAACCCACTGTTGGTATTAAGAAGGTTCTTGAGAATGATGACGATGATGCTGTTGATCCACATCTTGAACGTATTAAAAATGAAGCTGGTGGTGGTGAAAGCGATGAGGAGAAGCCTGCCAAAAAGGAACCAAAGAAGGACCTGCCTTCTAAGGCATCTACTTCAAAAAGGAAATCAAAAGATGATGAGGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCCGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGTGGAAGAGAAGGAACCATACGAGGCAAAAGCACGTGAAGATAAAAAACGTTACAAGGATGAAATCAGTGGCTACAAGAATCCCCAATCCATGAATATTGATTCTGGAAATGAATCTGACAGTGCCTAA 1824 0.403 MSDGHLFNNITLGGRGGTNPGQIRIYSGGIIWKRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVASLTNFFQNTCGISVEEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSELAITEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDAQPTVGIKKVLENDDDDAVDPHLERIKNEAGGGESDEEKPAKKEPKKDLPSKASTSKRKSKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSVEEKEPYEAKAREDKKRYKDEISGYKNPQSMNIDSGNESDSA* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00294 607 FunFam FACT complex subunit SSRP1 339 447 - -
Phac4g00294 607 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 576 - -
Phac4g00294 607 SUPERFAMILY HMG-box 510 592 IPR036910 -
Phac4g00294 607 FunFam Fact complex subunit ssrp1 199 338 - -
Phac4g00294 607 MobiDBLite consensus disorder prediction 562 607 - -
Phac4g00294 607 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Phac4g00294 607 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 523 591 IPR009071 -
Phac4g00294 607 Pfam POB3-like N-terminal PH domain 7 99 IPR035417 -
Phac4g00294 607 MobiDBLite consensus disorder prediction 562 588 - -
Phac4g00294 607 CDD HMG-box_AtSSRP1 520 594 - -
Phac4g00294 607 SMART hmgende2 522 592 IPR009071 -
Phac4g00294 607 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Phac4g00294 607 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Phac4g00294 607 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Phac4g00294 607 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Phac4g00294 607 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Phac4g00294 607 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Phac4g00294 607 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Phac4g00294 607 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Phac4g00294 607 MobiDBLite consensus disorder prediction 455 531 - -
Phac4g00294 607 SUPERFAMILY PH domain-like 206 440 - -
Phac4g00294 607 Gene3D - 95 179 IPR038167 -
Phac4g00294 607 Pfam HMG (high mobility group) box 523 591 IPR009071 -
Phac4g00294 607 FunFam FACT complex subunit SSRP1 1 93 - -
Phac4g00294 607 FunFam FACT complex subunit SSRP1 96 179 - -
Phac4g00294 607 FunFam FACT complex subunit SSRP1 507 600 - -
Phac4g00294 607 Gene3D High mobility group box domain 506 602 IPR036910 -
Phac4g00294 607 Gene3D - 339 447 IPR011993 -
Phac4g00294 607 Gene3D - 1 92 IPR011993 -
Phac4g00294 607 CDD PH2_SSRP1-like 342 441 - -
Phac4g00294 607 SMART Rtt106_2 348 441 IPR013719 -
Phac4g00294 607 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Phac4g00294 607 Gene3D - 199 338 - -
Phac4g00294 607 MobiDBLite consensus disorder prediction 455 514 - -
Phac4g00294 607 MobiDBLite consensus disorder prediction 590 607 - -
Phac4g00294 607 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00294 Phac-Chr4 3732383 3738578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00294 519 591 ARID Transcription Factor Family AT1G04880 41.096 5.23e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phac4g00294 POB3_N 1e-22 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00294 K09272 - gmx:100780190 1124.38