Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00259 ATGGAAAACGGCTCTGGACAAAACCGAGTTCGTAGAAGTGGCAATGGTGGACGAAACCAGGTTCGTAGAAATGGCAATGGTGGACGAAAGCAAGTTCGTAGAAGTGGCAATGGAGGTGATGGTGGTGGGTCGGCAATTACTTCCGAGATGCCGACAGTGACTGTGCGTGATGCCGTGTGCTATGTGCGTAAACTCAGCTATGAGTTTCGTGACCAAAAGGAGAAGTTTTACATGTTCCATCAAGTCTTGGTTGATTACAGGAATAATAGGATTAACTATGCTAGTCTGGTGGCGAGGGTTAAGGAGATTTTAAAGGGGCACAAAAAATTGATTTTGGGTTTCAACCGTTTCATAGAAAAGGACTATGAGATAACACTTCACAGGGATGCACCAGAAGAAGAAGAAGTGAAGTTCATGAACAAGATAAAGAATCGATTCCAAAGTGATGAGCCTGTTTACAACTCAATCTTGGAAATTCTGAAAATGTACAAGGAAGGGCTTAAGGACATTGGTGAGGTTTCAAGTAAGCTTGCTATCCATCTTGAGGAGAATGAAGATTTGGTGGAGGGTTTCAACAGATTCTTAGCTCGCCATGGTTGTGGGGATGTTGTTGAAGGATGA 621 0.4332 MENGSGQNRVRRSGNGGRNQVRRNGNGGRKQVRRSGNGGDGGGSAITSEMPTVTVRDAVCYVRKLSYEFRDQKEKFYMFHQVLVDYRNNRINYASLVARVKEILKGHKKLILGFNRFIEKDYEITLHRDAPEEEEVKFMNKIKNRFQSDEPVYNSILEILKMYKEGLKDIGEVSSKLAIHLEENEDLVEGFNRFLARHGCGDVVEG* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00259 206 MobiDBLite consensus disorder prediction 1 26 - -
Phac4g00259 206 Pfam Paired amphipathic helix repeat 74 117 IPR003822 GO:0006355
Phac4g00259 206 Pfam Paired amphipathic helix repeat 152 195 IPR003822 GO:0006355
Phac4g00259 206 SUPERFAMILY PAH2 domain 51 122 IPR036600 GO:0006355
Phac4g00259 206 Gene3D Paired amphipathic helix 130 198 IPR036600 GO:0006355
Phac4g00259 206 MobiDBLite consensus disorder prediction 1 48 - -
Phac4g00259 206 SUPERFAMILY PAH2 domain 131 196 IPR036600 GO:0006355
Phac4g00259 206 Gene3D Paired amphipathic helix 57 118 IPR036600 GO:0006355
Phac4g00259 206 PANTHER SIN3B-RELATED 53 197 IPR039774 GO:0003714
Phac4g00259 206 ProSiteProfiles PAH domain profile. 128 198 IPR003822 GO:0006355
Phac4g00259 206 ProSiteProfiles PAH domain profile. 50 121 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00259 Phac-Chr4 3427827 3429687 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00259 40 147 WRKY Transcription Factor Family AT4G12020 33.945 2.24e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac4g00259 PAH 3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00259 K11644 - pvu:PHAVU_004G023000g 281.952