Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00258 ATGAATGATGCCTTGCATTTTCTGAATAGAGTCAAAGATGTGTTTTGGAACGAAAGGGAGAAGTATGACATGTTGATTCAGATCCTGAAAGATTACAAGGCTGAAAGGATTACCTCTGAGGTTGTCGCTGCGAGGGTGAAAGAGTTACTGAAAGGGCACTGCAGTTTGATTTTGAGATTCAACGCTTTCTTGCCAAAGGAGCATGAGATCAAACTTAAGGACGAACCTTCTCAGGATCTAGTTCGTTTGGTTGACAACATAAGGGAACGATTCAAAAATGATGAGCATCTTTATCAATCATTCTTGATGAGTATAAAAACGTACAAAGAAGATAAGAGAAAGACAACTTGTGATCTTCATGGTGAGCTTGCTGTAATTTTTAAGGACCACCAAGATCTGCTGAAGGAGTTCACCAGAAAATTTCCTAACTATGACGAAGTTGAAGAGAATGTTGAGGATGAAAAGCCAAGACTGAGCATTCCCAAGTGGAAGCAAACATGTTTAGGATTGGTTGTCATCTCCTTCATTGCTAATGTCTTCCACCAACCCTATAATATTGTTTGCATGAGAGAGTATTTAACCAAAAGGGTTTCAAAGATTCTTCCCATTGGAGATGGATGGTTAGTTCAGAAGGAAACTTTCAGATGTGATCTTTGCAATAAATTTGCCCAAGAAAATGTGGTTATGCCTTTAATGGGAGAGAAAATGGGTGTAGTGGTTGAAACAATTTGTGCAGTGGTGATAGGTTTCACTATGGGTCTTATGTTTACATGGAGAGTAGCCATTGCAATGACACTTGTTCATCTTATTATCATTGTTTGCTTCAACATAAGAGGTGTCCTCAAGATCATGCCAAATAAGAACATCAAGATCCGTGATGATTGA 885 0.3864 MNDALHFLNRVKDVFWNEREKYDMLIQILKDYKAERITSEVVAARVKELLKGHCSLILRFNAFLPKEHEIKLKDEPSQDLVRLVDNIRERFKNDEHLYQSFLMSIKTYKEDKRKTTCDLHGELAVIFKDHQDLLKEFTRKFPNYDEVEENVEDEKPRLSIPKWKQTCLGLVVISFIANVFHQPYNIVCMREYLTKRVSKILPIGDGWLVQKETFRCDLCNKFAQENVVMPLMGEKMGVVVETICAVVIGFTMGLMFTWRVAIAMTLVHLIIIVCFNIRGVLKIMPNKNIKIRDD* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00258 294 Pfam Paired amphipathic helix repeat 98 138 IPR003822 GO:0006355
Phac4g00258 294 Pfam Paired amphipathic helix repeat 20 64 IPR003822 GO:0006355
Phac4g00258 294 ProSiteProfiles PAH domain profile. 70 144 IPR003822 GO:0006355
Phac4g00258 294 Gene3D Paired amphipathic helix 76 144 IPR036600 GO:0006355
Phac4g00258 294 PANTHER SIN3B-RELATED 2 146 IPR039774 GO:0003714
Phac4g00258 294 FunFam Paired amphipathic helix protein Sin3 3 65 - -
Phac4g00258 294 SUPERFAMILY PAH2 domain 78 139 IPR036600 GO:0006355
Phac4g00258 294 ProSiteProfiles PAH domain profile. 1 67 IPR003822 GO:0006355
Phac4g00258 294 SUPERFAMILY PAH2 domain 1 66 IPR036600 GO:0006355
Phac4g00258 294 Gene3D Paired amphipathic helix 3 65 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00258 Phac-Chr4 3420901 3423572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00258 2 75 WRKY Transcription Factor Family AT4G12020 43.243 1.12e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac4g00258 PAH 1.4e-06 No_clan