Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00257 ATGAAGAGGGCAAGGGATGATATATACTCAGCCTCTGCCTCTCAATTCAAACGCCCCTTTTCTTCGTCGCGTGCTGATTCCTATGGACAAAATCAAGTCCCTGGAAGTGGAGGGGGAGGGGGTGGGGGAGGTAGCAATGGAGGTGGTGTTGGTGGGGGAGCAACTACTTCACAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTACGACATGTTCCTTGAGGTCATGAAAGATTTCAAAGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGAAGCGGTTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGCGAGGTTTACAGTGAGGTTGCTACCCTCTTCAAGGACCATCGAGATTTGCTAGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCATTGCAGCGCTTTAATGAGTGGAGTTCTACAGCCCCAATGATGCGCCAAATGCCACCAGACAAGGCACAGCGCTATCGAAGAGACAGACTTCCTTCCCATGATCATGATATGAGTGCTGAACGCCCTGAGATGGATGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAGCGAGAAAGTAGGGATAGGAGAATGCGTGACCAGGAAGAGAGAGAACAAGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCGGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTTCTGACTTTCCTTCTTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACATTCCTGAATCAAGGTGACTCGGCCGGCGGATCGGTATTGGAGCGAGGCACTGCGCAGGTCAGTGGATTGGTTTCAATCCTCGATCGTGACTCGTGCGCGGTCATTTTTGGCCAAAAAAAAATGGAACTTGGTTGCTCCAACGCAGAGAATGAGGTTTTGCAGCGGTGGCTTCAATGGTCTTGTGCTGTGGAGGCGGCGGTGACGCACTCCGGTGAGGCTGTGAACGTAGCGGAAAATGAAGAGATTAAAGGGGACGGTGTGTGGCGCATGGAAGTAACTGATTTGCTTGGAAAGCATTCAGATCTTATGGACGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCATTATCTACTGATGTTCATTTAGCAAGACCATCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGGGCTAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGCAGATTATCCAATTCCTACAGCCAGTCAGAGATCTGAGCTTGGCGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTTAAACATATGCGCAGAAATCAGTATGAAGAAAGTTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATTAACGAAAATAAAATCAGTGTGGAGACTATGAACCGTATTGAAGAGCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGATTGTATGGTGATCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACCCATGCCCTTCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGCCGTTCAGATTTCAATAAAGTATGGGCTGAAATCTATGCTAAAAATCACTACAAATCACTGGATCACCGTAGCTTCTATTTCAAACAACAAGATTCAAAGAATTTGAGCACAAAATCCTTGGTTGCTGAGATTAAAGAAATTAAAGAAAAACAGCAGAAAGAAGATGATATTATTCAGTCTATTGCGGCTGGAAATAAACAGCCTCTAATTCCTCATCTGGAATTTGAATATTCTGATGCTGCTGGGATTCATGAAGACCTGTATAAACTTGTTCGTTATTCATGTGAGGAGTTATTCTCAAGTAAAGAGTTGTTGCATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTCCTTCCCAGTCTCATGCAATAGAAAGAGCAGAGGATAGAAAAACTGGGCATAATGTTCGCAATTTTGGTGTACCAGGCATAGGGGGTGACAGAAGCCCTCATGGAGACTCTCTTTCAATGAATTCAAGGTTAGCAAAATCTGATAAGAATGAAGCTGATGGTAGACTAACTGAAACAAAGAATGTTCACCGGACTAGTATAGCAACCAATGATAAAGAAAATGGATCCGTTGGTGGTGAACATGGTTGTAGAGATGATCCATTAATGGATAAGGGACTGAAAAATGTAGAATGCAATGATAAAGCATCCGGATTTAGCAAACCATTTACCTCTGATGATCAAGGAGCTAAAAACAGTGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACCAGCTTAGATGTATCACCAGCCCGTGCCCTTACTCCCTCACGACCTACTGATGTTGATGATTCTGTAGCCAAGTCTCAGGTTGCTAATGTACCATTGGTGGAGGGATGTGACATGGCAACTCCTGTTCCTGTGGCCAATGGTGTTTTAAGTGAGAGCAGTAAAGTTAAAACTCATGATGAATCTGCTGGACCTTGCAAAATTGAAAAGGAAGAGGGAGAATTATCACCAAATGGTGACTCAGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGTGCAGTCAATGGCTAAATCAAAACACAACACTGAGAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGACGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTTCGGGAAGATCATGAAGAGGAGGAAGACATAGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCGGCGATGCACAAGTTGGGGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGACGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTACGAGAGGATCTTATCAGCGAAAACAAATTCAATGAATGCAGAAATAAAATGGAAAACAAAAGATGCTAGTTTACCAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCATACGTGTTATTCACCTTGGACAAGTTAATTTACAAATTGGTTAGACAGCTTCAAACTGTCGCAACAGATGATGTGGACAGTAAGCTTCTCCAATTATATGAATATGAGAAGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCGTCCTTCATGAGGATAATATATATCGGATACAATGTTCCTCTAGCCCCTCACGATTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAATTGTTTGCCGTTTCTATTGATCCAAATTTCTCCTTTTATCTGCACAATGATTTTCTGTCCGTCTTTCCCGGCAAAAAGGAACCCCATGGCATCATACTGCATAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATAGCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTCTTCTTCCGGCCGAGAAAGAAGAGACGAACGCCGGCAGGGACCACAACCTCCCAGTTTCGTAGGGATAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCATAA 4236 0.4228 MKRARDDIYSASASQFKRPFSSSRADSYGQNQVPGSGGGGGGGGSNGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNEWSSTAPMMRQMPPDKAQRYRRDRLPSHDHDMSAERPEMDDDKTMLNIHKERKRESRDRRMRDQEEREQDLDNSRDLNLQRFPDKKKSVKKAEGFGMASDFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLNQGDSAGGSVLERGTAQVSGLVSILDRDSCAVIFGQKKMELGCSNAENEVLQRWLQWSCAVEAAVTHSGEAVNVAENEEIKGDGVWRMEVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDVHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETMNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDAAGIHEDLYKLVRYSCEELFSSKELLHKIMRLWSTFLEPMLGVPSQSHAIERAEDRKTGHNVRNFGVPGIGGDRSPHGDSLSMNSRLAKSDKNEADGRLTETKNVHRTSIATNDKENGSVGGEHGCRDDPLMDKGLKNVECNDKASGFSKPFTSDDQGAKNSVSIAIRGENSLNRTSLDVSPARALTPSRPTDVDDSVAKSQVANVPLVEGCDMATPVPVANGVLSESSKVKTHDESAGPCKIEKEEGELSPNGDSEEDNFVAYGDSNVQSMAKSKHNTERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGIGDAQVGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTNSMNAEIKWKTKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDDVDSKLLQLYEYEKSRKPGKLNDSVYHANAHVVLHEDNIYRIQCSSSPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRRTPAGTTTSQFRRDREERFRKLLACS* 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00257 1411 SMART hdac_interact2seq4b 494 594 IPR013194 -
Phac4g00257 1411 MobiDBLite consensus disorder prediction 196 263 - -
Phac4g00257 1411 MobiDBLite consensus disorder prediction 954 1098 - -
Phac4g00257 1411 PANTHER SIN3B-RELATED 58 106 IPR039774 GO:0003714
Phac4g00257 1411 MobiDBLite consensus disorder prediction 455 474 - -
Phac4g00257 1411 MobiDBLite consensus disorder prediction 184 263 - -
Phac4g00257 1411 Pfam Paired amphipathic helix repeat 114 158 IPR003822 GO:0006355
Phac4g00257 1411 MobiDBLite consensus disorder prediction 957 978 - -
Phac4g00257 1411 MobiDBLite consensus disorder prediction 1023 1043 - -
Phac4g00257 1411 MobiDBLite consensus disorder prediction 1 56 - -
Phac4g00257 1411 ProSiteProfiles PAH domain profile. 58 161 IPR003822 GO:0006355
Phac4g00257 1411 MobiDBLite consensus disorder prediction 1059 1079 - -
Phac4g00257 1411 MobiDBLite consensus disorder prediction 904 923 - -
Phac4g00257 1411 Gene3D Paired amphipathic helix 106 162 IPR036600 GO:0006355
Phac4g00257 1411 Pfam Sin3 family co-repressor 496 588 IPR013194 -
Phac4g00257 1411 FunFam Paired amphipathic helix SIN3-like protein 104 161 - -
Phac4g00257 1411 MobiDBLite consensus disorder prediction 14 34 - -
Phac4g00257 1411 SUPERFAMILY PAH2 domain 106 160 IPR036600 GO:0006355
Phac4g00257 1411 Gene3D Paired amphipathic helix 64 105 IPR036600 GO:0006355
Phac4g00257 1411 Pfam C-terminal domain of Sin3a protein 1131 1378 IPR031693 -
Phac4g00257 1411 Coils Coil 567 587 - -
Phac4g00257 1411 SUPERFAMILY PAH2 domain 56 106 IPR036600 GO:0006355
Phac4g00257 1411 MobiDBLite consensus disorder prediction 1003 1022 - -
Phac4g00257 1411 MobiDBLite consensus disorder prediction 788 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00257 Phac-Chr4 3400990 3412870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00257 43 106 WRKY Transcription Factor Family AT4G12020 57.812 1.04e-10 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac4g00257 Sin3a_C 1.2e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00257 K11644 - gmx:100807181 2076.21