Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00230 ATGGCATCAGGCGGAACCGAAGCCTTTCCCGATTTGGGTAAACACTGCCAGCACCGCGATTGCCACCAGCTCGATTTTCTTCCTTTCACCTGCCACGGTTGCCAAAAGGTGTTTTGTTTGGAGCACAGATCCTACAAGTCCCACGCGTGCACGAACTCCGATCACAACAGCAGAAAAGTGGTTGTCTGCGAAACGTGTTCCATGTCCATTGAGACCACCGGCTATGTTGGACAGGACGAGGAGGCAATCTTGGAGAAGCACCTCAAGTCTGGTAACTGTGATCCCACCAAGAAGAAGAAGCCCATTTGCCCTGTCAAGCGCTGCAAGGAGGTTTTGACTTTCTCCAACACCAGCAGCTGTAAAACTTGCCACATGAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGATCATGCTTGTAGCAAAGGAGTTTCAGCTTCTTCCTCATCCTCTGCTGCTAATGGTGGATGGAAGAATCGGTTTTTGGCTGCTGTAGTTTCAAGGACTGCACAGGAATGTGCCAAAACTGGTGCAACTCGTTCAGCCTCTCCTCCTAGCACTCCTTCTGTGAAGGCCTATTGA 579 0.5095 MASGGTEAFPDLGKHCQHRDCHQLDFLPFTCHGCQKVFCLEHRSYKSHACTNSDHNSRKVVVCETCSMSIETTGYVGQDEEAILEKHLKSGNCDPTKKKKPICPVKRCKEVLTFSNTSSCKTCHMKVCLKHRFPADHACSKGVSASSSSSAANGGWKNRFLAAVVSRTAQECAKTGATRSASPPSTPSVKAY* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00230 192 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Phac4g00230 192 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Phac4g00230 192 SUPERFAMILY AN1-like Zinc finger 6 53 IPR035896 -
Phac4g00230 192 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 180 - -
Phac4g00230 192 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Phac4g00230 192 Gene3D - 2 67 IPR035896 -
Phac4g00230 192 Gene3D - 78 158 IPR035896 -
Phac4g00230 192 SUPERFAMILY AN1-like Zinc finger 95 146 IPR035896 -
Phac4g00230 192 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Phac4g00230 192 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Phac4g00230 192 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00230 Phac-Chr4 3173922 3176884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00230 1 172 C2H2 Transcription Factor Family AT3G28210 60.465 1.76e-75 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00230 - - gmx:100500384 342.428