Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00229 ATGGAGATTCAACAAACGCTGAAGCTCACTATCCACAAGAAATGGCCTTCATCGCCCAAGAAAACACCAAAAGATTCAGAACCAATTACCACCCCTGCAACTCCAAAGCTGAAATGGAAGAAAATCTTCTTTCACACCAAAACCAAACCCAAAATCCAAACCCCCCCAGAAGAGTTCCTCTGCCCCGTTTCCCGTTCCCTCATGTCCGACCCCGTCATCGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTCGAAGCCTGTAAAAATCTTAACTTTGCACCCCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTTAAATCCGCCATCCTCAAGTGGTGCCACACCACCCACACACCCCCTCCTCTCCCCCATAACAACCTCGTACAGCAAACCTCAATCTCCCCAGACACCCCCAACACGAACCTCGTACAAACCTCGATCTCCCAGGACGTCGTTTCCTCAGAAGAAAAACTCTCCGACAGAGATCCGATCCTGGATTCCCTGGACGAAAACCCACCCTCGAGCAACCTCCGCCGCCACGCGGAAACCGAGGTGCCCATAAGACCGACACATCTGTACACGAGCTCCGAGGAATCCCTAGCCACAACCTCAGCTTCGACGCCGCCGTTTCAGCTCGCCACGCGCCCCAGTTGCTGCTACTACTCTTCCCCTTCCTCGTCAGAAATTGAACCCGCCGCAACCCCAGAAGAAGAAGAAATCATGGAGAAGCTCAAAAGCCCACAACAGAACATAATCGAGGAAGCGCTTCTCTCTCTGAGAAAACTCACCCGAATGAGAGAAGAAACCCGGGTCCAAGTCTGCACCCCGCGGATACTCTCTGCGTTACGCTCCCTCGTTTTGTCGAAACATGTGAACGTTCAGGTGAACGCTTTGGCTTCAGTGGTGAACCTTTCTCTGGAGAAGAGTAACAAGGTGAAGATCGTGCGGTCGGGGATGGTGCCACCGTTGATCGAAGTTCTGAAATTTGGATCCCCTGAGGCGCAGGAACACTGTGCGGGCGCGTTGTTCAGTTTATCTCTCGAAGACGATAACAAAACCGCCATTGGTGTTTTGGGTGGTTTGGGTCCGTTGCTTCAGATGCTCCGAGTCGAGAGCGAGCGGACTCGCCATGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGTAATCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTTTTAAGTATGGTTAAGTTGGGTCACATGACGGGTCGGGTTCTGTTGATTTTGGGAAACTTGGGTTCCGGGTCGGATGGACGGGCCGCGATGTTGGATGCTGGTGTTGTGGAGTATTTGATCGGGTTACTGAGTGGACCCGACTCGGCCACCGGGTCCGTTCGAGAGAGCTGTGTGGCGGTGATGTACGCGTTGAGTCACGGCGGCTTGAGGTTTAAGGCGGTTGCGAAGGCGGCGGGGCTGGTGGAGGTGTTGCAGAAGGTGGAGAAACTGGGGAGTGAGAGGTCTAGGTATAAGGTGAGGAAGATTTTGGAGATGATGAGGGCCAAAGAGGTGGAGGAGGAGGATGTGGATTGGGAGGAGTTGCTTGACTCGGGGCTGGGTTGCCGGACTCGGGGCCGACTCGGTGGCGGGTTGGACGAGTCGAGTGCTAACTCGGCCGAGTTTTGA 1689 0.5465 MEIQQTLKLTIHKKWPSSPKKTPKDSEPITTPATPKLKWKKIFFHTKTKPKIQTPPEEFLCPVSRSLMSDPVIVSSGHSFERSSVEACKNLNFAPQLPDGTTPDFSTLIPNLALKSAILKWCHTTHTPPPLPHNNLVQQTSISPDTPNTNLVQTSISQDVVSSEEKLSDRDPILDSLDENPPSSNLRRHAETEVPIRPTHLYTSSEESLATTSASTPPFQLATRPSCCYYSSPSSSEIEPAATPEEEEIMEKLKSPQQNIIEEALLSLRKLTRMREETRVQVCTPRILSALRSLVLSKHVNVQVNALASVVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSPEAQEHCAGALFSLSLEDDNKTAIGVLGGLGPLLQMLRVESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLSMVKLGHMTGRVLLILGNLGSGSDGRAAMLDAGVVEYLIGLLSGPDSATGSVRESCVAVMYALSHGGLRFKAVAKAAGLVEVLQKVEKLGSERSRYKVRKILEMMRAKEVEEEDVDWEELLDSGLGCRTRGRLGGGLDESSANSAEF* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00229 562 ProSiteProfiles U-box domain profile. 54 128 IPR003613 GO:0004842|GO:0016567
Phac4g00229 562 Pfam Armadillo/beta-catenin-like repeat 319 355 IPR000225 GO:0005515
Phac4g00229 562 SMART arm_5 316 356 IPR000225 GO:0005515
Phac4g00229 562 SMART arm_5 437 480 IPR000225 GO:0005515
Phac4g00229 562 SMART arm_5 357 397 IPR000225 GO:0005515
Phac4g00229 562 SMART arm_5 275 315 IPR000225 GO:0005515
Phac4g00229 562 SMART Ubox_2 58 121 IPR003613 GO:0004842|GO:0016567
Phac4g00229 562 SUPERFAMILY ARM repeat 248 509 IPR016024 -
Phac4g00229 562 Gene3D - 243 519 IPR011989 -
Phac4g00229 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 139 IPR013083 -
Phac4g00229 562 FunFam RING-type E3 ubiquitin transferase 244 520 - -
Phac4g00229 562 PANTHER U BOX DOMAIN-CONTAINING 48 521 - -
Phac4g00229 562 MobiDBLite consensus disorder prediction 1 33 - -
Phac4g00229 562 SUPERFAMILY RING/U-box 52 124 - -
Phac4g00229 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 369 IPR000225 GO:0005515
Phac4g00229 562 Pfam U-box domain 56 124 IPR003613 GO:0004842|GO:0016567
Phac4g00229 562 FunFam RING-type E3 ubiquitin transferase 13 130 - -
Phac4g00229 562 MobiDBLite consensus disorder prediction 163 194 - -
Phac4g00229 562 MobiDBLite consensus disorder prediction 157 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00229 Phac-Chr4 3165486 3167950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00229 56 562 U-box Gene Family AT5G40140 55.620 8.85e-173 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00229 - - gmx:100798675 843.188