Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00213 ATGCATGGGTGTGGTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGTAGCCATCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTCTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTATCGTATGATAAACAAGAAAGTCCAAGTTTAGAAGTGCATTGGCTTTACCGACCTGCTGATTTGAAACTTGCTAAAGGAATTGTGCTGGAAGCTGCACCAAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGTTATTAGATAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAGCATCAACACAGTCATTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCCTTTGGTGCACAGGGTAAGGGTAAAAAGAGAGAGCGGGATCAGGGTTCGGATTCATCTAAAAAGGAGCGGTTATTTAAGATTGAAGATGGAGACTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAGCCTGACAGCGCTGATAAAAAAATAGATTTACCTGGGCGGATAATGCTTGTCGATGTAATTGCACTTACAGACCGGTACGATTGTCTGGGTTGGTTTGTACAGCTCAGGGGTTTACCTGTGTTGGATGAATGGCTGCAGGAGGTCCATAAGGGCAAAATTGGTGATGGGAATATGCCCAAAGAAAGTGATAAGTCTGTTGATGAGTTTTTGTTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAGACCTGTAATGTTGGAAAGTCTGTCAATCATTTACGCACCCACAAAAATGCTGAAATTCAGAGGAAAGCTAGGAGTTTAGTAGACACATGGAAGAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCGAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAACTCCGAGTCTCCTCATGTTGGTAATAGGAAAACAGGGGGATCCTCTGATAACGTTGTGAAGAGCCCTGCTATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAGTTAAGTTCCGGAGAAACTTTGTCCAAGTCTTCATCTCCTGGCTCTACTAAATCATTGACTACCTCAGTGGGCATGAACTCAAAAGATCAAAACAGTAAAGTCTTTGTTGGAGCTGCAACGGCAGATCTGCCTCTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCCAGTCAATCTCAAAATAACAGTATAACTTGTTCTAGTGAACATGCTAAAACTATTGGTTCTTGCAGGGAAGATGCGAAGAGCTCCACTGCAGTGTCAATGAGTGCGAGTAAAATTCATGGTTGTGCATCTCGAACTCGCAAGTCAAGCAATGGTATACACGGGGCTGGTGCAGTAGGTCAGAAGGAGCACAACTCTGCAAAAATTTCAACCAGAAATTCACCGACTGAGAAAGTATCACCAACTCGAGCATCCCATGAAAAATCAGTTGACCAGCCCCTTGCCGATCAAGGGAATAACCAGCGATTGATTCTCAGGTTGCCAAACACTGGTCGCAGTCCTTCAAGGGGAGCTAGCGGGGGCTCTTTTGAAGAACCAGCAACAACGAGCAGCAAAGCTTTGTCTCCTGCTGACCTGAATGATAATCAGGACAGAAGATTGAAAACTAAGACCGAGTGTTTGCTGACCCATGTGTCAAATATGATGAACGAGTCTTCTGATGCTAATGAAGCTTTGATTGGTGATGAAAATAAGGGCACTCCAATAGTTGATGAGCGATGCAGGGCAATTGAAGATAGCGACAAGGTATTAGAAACATCAAAACCAACTAGTTTGCCATCTGGATTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTGGTTGAAAGCTGTGTAAAATTTTCTGAAGCAAGTTCATCCGTTTCCCATGGAGATGATGGGATGAACCTACTTGCTACTGTGGCTGCAGGGGAAATATCCAGATCGGAAAATGCATCACCTGTGGCATCCCCCGAGAGAAAGTCGTCTCCTGCAGCAGATGAACTGTGCTCTGGCAATGATTTAAAGTTAAAGCATTCTGGTGAAGCAGCTGTTCGCACTCTTTCAGAGTTGAATGGTAGGGCTACAGGAGAGCATCCTTTGAATACAGTTGATTCATCGCAGATAAAAAATGAATTGAGGCATCCTGCCATGACAGTGTCACGTGATTTTCAAGGGGATGGTGAAACCATTTCGTCTTCCCACGATACTCGTATAAATGTCTCCTCTACAGATTTGTTACAAAATGTTGAAGGTCCATGCTTACGGCCCGAAACCATAGAAGATGCTTCTGTAACTATACTGACTCCTAAAAAGGAGAGTAATGCAGACGCTGGAGTTTCAGACTCTAAACTAAAGCCAAGGGCCTCCTCTTTTGATGATGATCAGAAGGTTGATCACATGAATGAGGAGATCATTGAGAATGAGAAAATGTTGGTTTCAAAACCTTTTACAAATGTTGAGTCAGAAAACGAATCAGGTGAAAAGCAGCCTGATTTAACTTCAAGTGTGGATAATGAGAACCAGATTAGTGTGGAGAAAGCAACAGGTACAGGAATACTAGTGCAAAAGACCTCTCCAATTGCTGAAAACTGTGAGTCTATATATTTAAAAAAGGAGTTACCTGCTTCTGGTAATGCTTTAATGGTACCCATGGATGAAAATGCTGAGGACATGAAGTCAGTAGTGATTGAGCCTGACGAAAGACGAAGGGAGCAGGATTCTTCTTCTCCAGATGATTCTAATGATTGTGCTGAAGATAATATGGGCAGAAAAGAGGCCATTGGTCAGTGTTCTGGTTCATCATCAGTTCAGCCAGATTTACAAACAATGTCTAGGAAAGAGAATGAAGTGTCCAAATCATGTGAGCAAAAGCTAGATGCAAATCCGTCTGAAGTTTCAGGAGAGAGGCATGCATGCTCTGCAGCTGGTGCTGATGCAGCTGTAAAACTTGACTTTGATTTAAATGAAGGCTTTCCTTTTGATGACGCAGGCCAAGGGGAGATTGCCAGACAGGAAGATCCTATCACATCATCTGCAGTTCATGTTCCTTGCCCGTTGCCTTTTCCCATTTCGTCCATCTCTGGTGGCTTCCACCCTTCAATTACAGTGGCATCTGCTGCTAAAGGGCCGGTTATTCCACCAGAAAACCCATTGAGGATGAAGGGGGAGCTTGGATGGAAAGGATCTGCTGCTACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATGCTGAGATGCAGTCCTCTACTAATGATATTACTTCTGTTGAAGTCACTTCTATCAAACAAAGCCGTGCTCCCTTAGATTTTGACTTAAATGTGGCAGATGAAAGATGTTTTGAGGATGTTGGTTCACATGGTTCTTTAGAATCTGGACCACATGATCGTAGTGTGGGACTCGATCTTGATTTAAACAGAGTCGATGACACTCCTGAAATTGGTTCTTTCTCTATAAGCAAACTGGATATTCCTTCTTTACCAAGCAAGCCGTCACTGTCTAGTGGGTTGTCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAATGGGCTTGGCCTTGAAGAAGTTGGTAGTGAAGTCCCAGCACGTAGTCAGCTGATGAAAAACAGTGTACCGTTTCCAAGTGCTGTTCATAGCGCAAGAACAAACAATGCTGAATATGGGAATTATTCTGCATGGTTTCCTCCAGGAAATTCCTATCCTGCAATTACTGTCCCGCCACTTCTGCCTGGTAGAGGGGAGCAGAGTTATGTCAGTGGTGCTGGGGCACAAAGAATAATGGGTCCTACAGGTAGCAGTCCTTTCGGTCATGAAATATACAGGGGATCAGTTCTTTCATCCTCTCCGGCTGTTGCTTATCCATCCACTACAGCTTTTCCATATCCTGGATTTCCATTTGAAACCAATTTTCCATTATCCTCAAACTCCTTTTCTGGGTCAACTGCATTTATGGATTCCTCGAATGTGGGCGGGCTATGTTTTCCTACCATGACTTCACAGCCAGTTGGGCCTGGTGGTGTTGTTTCATCCACGTATCCCCGTCCATATGTTATGAGTCTTCCAGGTGGTACTAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGTGGCAGATACAGAACGGAGGGATGATAGATTGCCTTCAGGATTGAGGCAAATGTCTGTCCCGAACACACAAGCCTCGATTGAGGACCACTTGAAGATGTTTCAGATGGCAGGAGCTGCATTGAAAAGAAAAGAGCCTGATGGTGGTTGGGATGCTGAGAGATTCGGTTATAAGCAACACTCACGGCAATAG 4728 0.4399 MHGCGGDQWKHNRHMWPVPANATTVAIDSSPSQFICKDGRKIRAGDCALFKPPRDSPPFIGIIRKLSYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPASTQSLKSGSDNIQNSSSFGAQGKGKKRERDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNMPKESDKSVDEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVVKSPAIQPSLSKSSQSKLSSGETLSKSSSPGSTKSLTTSVGMNSKDQNSKVFVGAATADLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCREDAKSSTAVSMSASKIHGCASRTRKSSNGIHGAGAVGQKEHNSAKISTRNSPTEKVSPTRASHEKSVDQPLADQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTSSKALSPADLNDNQDRRLKTKTECLLTHVSNMMNESSDANEALIGDENKGTPIVDERCRAIEDSDKVLETSKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSHGDDGMNLLATVAAGEISRSENASPVASPERKSSPAADELCSGNDLKLKHSGEAAVRTLSELNGRATGEHPLNTVDSSQIKNELRHPAMTVSRDFQGDGETISSSHDTRINVSSTDLLQNVEGPCLRPETIEDASVTILTPKKESNADAGVSDSKLKPRASSFDDDQKVDHMNEEIIENEKMLVSKPFTNVESENESGEKQPDLTSSVDNENQISVEKATGTGILVQKTSPIAENCESIYLKKELPASGNALMVPMDENAEDMKSVVIEPDERRREQDSSSPDDSNDCAEDNMGRKEAIGQCSGSSSVQPDLQTMSRKENEVSKSCEQKLDANPSEVSGERHACSAAGADAAVKLDFDLNEGFPFDDAGQGEIARQEDPITSSAVHVPCPLPFPISSISGGFHPSITVASAAKGPVIPPENPLRMKGELGWKGSAATSAFRPAEPRKNAEMQSSTNDITSVEVTSIKQSRAPLDFDLNVADERCFEDVGSHGSLESGPHDRSVGLDLDLNRVDDTPEIGSFSISKLDIPSLPSKPSLSSGLSNGGSVSRDFDLNNGLGLEEVGSEVPARSQLMKNSVPFPSAVHSARTNNAEYGNYSAWFPPGNSYPAITVPPLLPGRGEQSYVSGAGAQRIMGPTGSSPFGHEIYRGSVLSSSPAVAYPSTTAFPYPGFPFETNFPLSSNSFSGSTAFMDSSNVGGLCFPTMTSQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVADTERRDDRLPSGLRQMSVPNTQASIEDHLKMFQMAGAALKRKEPDGGWDAERFGYKQHSRQ* 1576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00213 1575 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Phac4g00213 1575 SMART BAH_4 40 155 IPR001025 GO:0003682
Phac4g00213 1575 MobiDBLite consensus disorder prediction 950 971 - -
Phac4g00213 1575 Pfam BAH domain 42 147 IPR001025 GO:0003682
Phac4g00213 1575 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 308 417 IPR035441 -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 513 569 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 1027 1054 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 1554 1575 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 432 490 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 610 656 - -
Phac4g00213 1575 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1575 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 218 248 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 513 664 - -
Phac4g00213 1575 CDD TFIIS_I 328 404 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 1027 1097 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 905 925 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 1059 1076 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 1196 1216 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 409 424 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 178 251 - -
Phac4g00213 1575 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 271 407 IPR035441 -
Phac4g00213 1575 Gene3D - 24 255 IPR043151 -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 1497 1538 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 190 217 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 406 490 - -
Phac4g00213 1575 ProSiteProfiles TFIIS N-terminal domain profile. 320 406 IPR017923 -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 582 598 - -
Phac4g00213 1575 Pfam TFIIS helical bundle-like domain 354 403 IPR017923 -
Phac4g00213 1575 SMART TFS2_5 326 405 IPR003617 GO:0005634
Phac4g00213 1575 MobiDBLite consensus disorder prediction 778 803 - -
Phac4g00213 1575 MobiDBLite consensus disorder prediction 1556 1575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00213 Phac-Chr4 2980838 2988406 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phac4g00213 BAH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00213 - - gmx:112998769 2524.97