Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00203 ATGTCAGAAAGCATGTATCCTAGGTTGTTGGTTTTGGACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAGAAAGATGGTTACTTGAGCTACTCACCACCCCTTTTGTCTTCTTCTTCTTCACCTCCTTACCCTCCTGGTGCTGCTTTCCACAAAGAGTCACCTTCAACAACAACAACAACATCATCTGGCACTAGAATTAGTCCTGCTGTTCTCTTCATCATAGTGGTTCTTGCTGTTCTGTTTTTCATCTCTGGCCTCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTTCTGCATCTGCTCAATCCAACAGGCACCCAGAAATCTCCACATCTGATGCTCTCCAGAGGCAGCTGCAGCAGCTCTTCCATCTCCACGACTCTGGCTTGGATCAAGCTTTCATTGATGCTCTTCCTGTCTTTCAGTACAAGGAGATTGTTGGGTTGAAAGAGCCTTTTGACTGTGCTGTTTGTTTGTGTGAGTTTTCTGAGAAGGACAAGCTCAGGCTGTTGCCTGTGTGCAGCCATGCTTTTCACATCAGTTGCATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACGCTTCTCACTCAGGGATTTTCTATTGAGAACCCTATATTTGATTTTGATGATCTGAGGGAGGATGAAGGGTGTCCTTGTAACGGGGAGAGTGGATTCAGTACTGGGCAGAAAACAGTAGTGGTTGAAGAAAGTGTGGAGAAAGGGGTTTTCCCTGTGAGGCTTGGGAAGTTCAAGAAGCTGAATGTGGAAGGTGGGGAGAGAGAAGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGCTACTCTATGGGGTCTTACCAATATGTGGTTGGCAATTCTGACCTCAGGGTGGCCTTAAACCATGAAATTGATAAAGGTCAAGTCACAAGGCTCACCAAAGGAATGGAACATGATGATGGGAAGCTTTCAGTGGAGGGAGATGTGGAAGCAAAGAAGATTAGTAGTGTGAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGGAGATTACCTACTTCTTTGGATGCTCAAATGGGCATGCCAATGCCATCTTTTATGAACACAGATTTTCAAAGGAGGAGGGAAACAGAAGGGGCATGA 1185 0.4549 MSESMYPRLLVLDHTHLKMAWVKHQIQQKDGYLSYSPPLLSSSSSPPYPPGAAFHKESPSTTTTTSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASAQSNRHPEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPVCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGCPCNGESGFSTGQKTVVVEESVEKGVFPVRLGKFKKLNVEGGEREVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHEIDKGQVTRLTKGMEHDDGKLSVEGDVEAKKISSVSKGDSFSVSKIWLWPKKGRLPTSLDAQMGMPMPSFMNTDFQRRRETEGA* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00203 394 MobiDBLite consensus disorder prediction 369 394 - -
Phac4g00203 394 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Phac4g00203 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 211 IPR013083 -
Phac4g00203 394 Pfam Ring finger domain 162 205 IPR001841 -
Phac4g00203 394 MobiDBLite consensus disorder prediction 43 68 - -
Phac4g00203 394 FunFam RING-H2 finger protein ATL46 125 210 - -
Phac4g00203 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 67 357 - -
Phac4g00203 394 SUPERFAMILY RING/U-box 142 211 - -
Phac4g00203 394 CDD RING-H2_EL5-like 162 205 - -
Phac4g00203 394 SMART ring_2 163 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00203 Phac-Chr4 2914081 2920358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00203 60 364 C3H Transcription Factor Family AT2G18650 41.493 9.59e-60 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00203 - - gmx:100806337 642.499