Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00187 ATGATCATGGAGCTCCCCGATTCTACCGGCGGCCAACGCAACCTCAACGCGCCGCCGCCGCCGCAGCACAGCAACCACCACCAGGACGCTCGCTCAGGTCTTGGAATCGACCTTAACGAGATCCCTTCGCCTTCCTCCTTGTTCGCCGAAACCCTACCGGACTCGGTCACTGTCGACGTGGTCCGCGCGTATCACGACAACCCCGGGCCGCCTCCGGGAGCCCCCGCCGCAGTCCCCAGCGGCGGCCTCGCTAATTGCGCTGCCTGCTCCAAGCCCTGCCCCGCCGCCGCCGGGAGCCACCACCACCTCGTCGTGTGCGACGGTTGCGAGCGCGGGTTCCATCTCGCTTGCGCCGGAATTCGCGGAGGAGGACGCCAGGCCGCGAGCCTCGAGGAGTGGGTCTGCGGGGAGTGCGTCGCCGCCGGAGTGAAGAGCAAGCGGTGGCCGTTGGGAGTGAAGCAGCTGCTCGATATCAATGCTCCGCCACCGAGCGAAGCCGAAGGCGACGGCGTCGGCGACGGAGACGCGCAGGATTTGAGAAAGCACACTCTGGGTGATAATTATTTTGGTGCCAATCCATTTGTTGCCCCTGTGACGTATTCAAACTTTTACAATGGAAATGCTACTGGCTTCCAAAAGGCTTCTGGAGGTTTGACACATGCTGATAGAGTGGGTTTTGAGGATATATTGAATCATACTCAATCAATTACTAGAAGATTTGAGGAGGCTCTTAAAGATTTTATATCTGAACAACGTGGTGTACTAGAGGAAGGTTGGCGAGTAGAATTTAGACAATCAGTGAGCAGCACTGAACTATATGCAGTTTACTGTGCACCTGATGGAAAGATATTTGATTCTGTATATGAAGTAGCTTGTTATTTGGGGCTAATGTCTGGCTTCAACTCTGTTGAATCTGAACTAAGAAATGAGAGGTCTCTCGCGTCTTTAAGTGGGTCTCTGTCTAGAAAAAAAAAGTCAACAAGATCTGCAGTGGTCAATGGTTTTGTGGAAAAACGGGGAACCATGATGAATAGTAATTGTAAGGATCCTTCCTCTGAAGGTTTAAATGTGGAATGTGCTACTACTAGGGGGAATATCCCAAAACCCTTTGAAAGTGGAAGAAAAGATGATGGACACTCCTGCCCTCCGCAATTTGAGGATGAACTTCCTCTACAGTTCAATGACTTCTTTGTTCTTTCATTGGGGAAAGTTGATGTGAGACCTTCATATCATGATGTTAATCTTATCTGTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGTTCTCTCTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGTGTTCCTGTTCAGAATTTCCTGTTCCAGTTGGGTCAACCATCCTTTCAATGTCAAAATTTTGTCAACTTGTGTCTCAAGCCAACGAAGGTGAGAGAAAAACTAATGCTAGTATGGATTTGGATGATGGTGAAAGTATCCAGATGATGCTTCAAGACCCTTGTGTACCAACTGAAAATGATGTCCTAAGTTGCTCTGCAAACTTCTCAATTAGGGATTCTCATTTATCGGATGTACTACGCCCTGTGACTGGTTCAGTTCAAGATAATACTATAAATTCGTTAGCTGGTAACTTAGAGTTTAATGATGGAATTGGTGAAATTTTGGTGGAAGAGCGGTCATCATGCTCTGCATGGAGAGTTATTTCTCAGAAGTTAGTTAATGTTTGCAAGGATATCTGCAACCAGAAAGGAACTCTCAAGTTCTATTGTAACCATGCTAAGAATGAAACATGCTTACATCAATGGGATTTAGGGAATGTAAAACGTGATACACACTTTACTTCGGTGGATAAATTTTGCAGTTCCCTTGGTTCAGTTGGCATCCCTGATGTAATCTATGCAGACAGTGATCTGGAAGGTATCTCTGAGGCTTTGAGAAAATGGTTGGGGCAGGATAGGTTTGGATTGGATGTTGAATTTGTTCAAGAAGTATTGGAACAGCTTCCTGGTGTTGAATCTCTGCAGTATGAACTTTTAAATAATAGAGATAACAGCTCGTCCTTGCCAACAGTAGGAAATGGTTTCTTAGTGGTTGAATGGAGAGAGGGATCAAAATATCAGGAAGAAGCACTTCAAGGTTTATACAGGAGGACCAAAAAGGCAAGTTTGACTGAAAAAAGCTTTAAGGATGGTCGTCATCCACCAGTTGGGAAGCCTTTATGCTCTAGGGCTCCTGGCGAGCTCATTGGTGATATTTTTCAGGCTTGGGAGCTTTTAGAGCGATTTAACGAAGTTCTGGACCTGAAAGAACCGTTGTCATTAGATGATCTTGAGAAGGAACTAATTAACCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAGGGACATGGATGAAAGTCAAGTTTTGATTTCCCAAGGAACTGATGGTAATTGCAGACCATTATTGTCCCCAAGAGTTGAAACTGGTCCATCAGGTTCCATGGAAAGTTCTCATGCATTTATTCAAATGGAAACAGAAGCAATGAAAGAGGCCGCTCAAGTTAAGCTTGCATCTTTCACTTATGCCAGATGCTTTGGTGTAACTTTGACCAAGGCACATAATTCATTGCTGAGAGTGCTAATACGTGAATTGCTATCAAGGGTGGCTGTCCTGGTGGATCCAAATTCTGAACCCGGAGAAACACGAACAAGGCGGGGAAGAAGGAAAGATATGGATAGTGGTGTTTCTGCTAAACGAACCAAGCTCAACATGCTTCCTATTAATGAATTGACCTGGCCAGAATTAGCTCGTAGGTATATCTTGGCTTTTTTAACAATGGATGGCAACCTTGAGTCTGCAGAAATTATTGCCCGCGAAAGTGGTAAAGTATTTCGCTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGTTCTCTTACCGGTGTGGCTGGGATGGAAGCAGATGCACAGCTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTGAGCAGAGACAGTGATGTACTAACCATGGAAGAAGAGTCTGATGCAAAGGGTGCTTCTGAGAAGAAATTGGCAAATGATGGTAATGTTCCTGAATGGGCTCAAATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGCACTCGAATCAGGAAGTGTGTTTATGATGCTCTGGGTAAGGATCCGCCAGAATGGGCAAAGAAAAAACTGGAACATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTTTTGGCTGATGTTGCGGGTGAAGGACTGCAATCAAATCCCATTAAAGGACAGAAAAGGAAGATTGTTATATCAATTTCTGACATCATGATGAAACGATGTCGCATTGTATTACGCCGTGCTGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTGATTAATTCTTCAGATAATGACGATGAGGGGCTTCTTGGATCTCCAGCCATGGTGGCCCGCCCTCTAGACTTCCGCACTATTGACCTAAGATTAGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGCGAGCTGTGGAACAATGTTCGTGTTGTTTTTGGGGATCAACCTGATTTACTCGAACTGGCTGAAAAGTTATCCCAAAACTTTGAATCACTATATAATGAGGAGGTTGTCACCAATGTCCAAAAATTTATGGAGTATGCTAAACTGGAATGCTTAACTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAATGAAAGAGACTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGACGATGATAGTGTTTTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTAAACCCTCCCCTTGCAAGGATTCCTGAGGGAAACTGGTACTGTCCTTCCTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTACACAGGTTATTGGCAAATGCCGAAGTAAAAAATTCCAGGGTGAAGTTAATTCTCTTTACTTGGAATCCCTTACTCATTTATCAACTGTAATTGAAGAAAAAGAATACTGGGAGCACAGCTTGGGCGAGAGAACTTTCCTTCTTAAATTTTTATGTGATGAGTTGCTTAACTCTTCCATGATACGCCAGCACCTTGAGCAATGTTCAGAGTTGTCAGCTGAGTTACATCAGAAATTGCGTGCACATTCTGCAGAGTGGAAAAACCTGAAAACTAGAGAGGACATTTTATCTACAAAAGCAGCTAAAATTGATACTTTCTCGTTAAATACTGCTGGAGAAGTTGGTCTTAGGGAAGGGGTTACTACTTTATTAACAAATACTGGTAAATGTCTGGTTCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGCCTGCCTTCAGAAGAGACCACCAAGGAGAAGTATAGGTTTGATAGTGTAGATAAAAGCATGTCCGTGACAAACTCAGATTCTGATAGCCAAAATATGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGCTGTGGAGTCTCAATCAACGGATAAATCCCCCAAATCTTTTCCATCACCAAATATGTCTCAAGAAATAAATGGTTCTGGTGGAGCAGCTCATGCCCAGGGTAACCACCAGAAATGTGAGGGGAGAGACATATCTACACCTGTGACGTGCCAGCAAGGTGGGGTGCCAGTTGATGCTTCACATACTGCTTTGAATGAGTCAGAACCCTATCACCTTGAGCTCAACGCCATCAAGCGTGATATTTCAGTATTGCAGGACTCCATAACTAGTGTAGTATCACAGCTGCTGAGGCTCTCTGTTCGCCGGGAGTTTTTGGGCATTGATTCCATCGGTCGATTGTATTGGGCTTCAACTTTGCCTGGAGGACGTTCACGAATAGTAGTTGATGCAAGTGCTGCACTGCTGCATGGAAGAGGAATACCATTTAGCAGAGACTATGTGGATAAGTTTTCTGTTCTGCAGCATTCTTCACTATCTGAGAAGGATTCCTCTCAGCTTAGAAATGCTTTGGCCAATAGTTCTCCATGGATTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGATGATAGTGATCCTAAAGAAAGGGAACTGAAAGATTCCATTATGCAGGGGCCAAGATCAAGATTCCAAGAGTTCCTTAATGCGCAGACTGAAGAGCAGGTTGAGGACCGAGGACCTATTTCTATGCCCATAAATAGAGAGAAAACAGTATCTAATTCTCTTGTTACAAAGGCGACTTCCTTGCTGGAAAAGAAATATGGCCCCTTCTTCGAATGGGATATTGAGATGTCGAAGAAGCAAAATAAAAAGTCCAGAACAACAAATGATGAAAAGTTGTTTAGGTGTGAGTGCCTAGAACCCATATGGTCCGATAGGAGACACTGCACATATTGTCACAAAACTGTTTCAAGTGATGTTGAATTTGATGGACACAATGATGGCAAGTGTAATGCAGGTCTTCCGGTTGCAGAGAAGAATAGGAACAAAATTGGATCTTCTAAAGGAAAAGGAAACTTAAGATGTGATACCTCACGAGAGAAATTCAGAGCTGATGCGGAAACAGCTGGAACCAAAGTTGGTGGTTGTTCTAAGCTAAGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGAGACAAGTGAATCCAACAGGGATCTTGTCAAAGAAATAGGTCTTATTGGTTCGGATGGTATCCCATCCTTTGTTCCTTCTGTATCTCCTCTTGTTAGCGAGTATACACGATTCTCAACTCCAAAGGATGATGACACTATTGGTGTTTTGTCCAAACCAACGGAAACCCGTGGTTCTCAGGGAAACACTGATGGAGCTGGTGCATGTCTTGACCATAGTTCAGGCATTTCTACTGGTAGGTTAGCTGCCAATGAAATCAATAAATCCAATAAATCATCCTCGGGAGAACAAAGAGATGGGAAATTCTCTTTTTGTGGTCCTGCTTCAGATATGGGAGTCGATGGCTGCTGTGTGGTTCCTTTGTCGTCATTGAAACCATTAGTTGGAAAGGTTTCTCACATTTTGAGGCAACTGAAGATTAATCTGCTTGATATGGATGCTGCACTCCCAGCATTTGCTCTGAGACCATCAAAGGCAGAGTCTGAGAGAAGACAGGCTTGGCGTGCATTTGTGAAATCTGCAGAGACTATATATGAGATGATTCAGGCGACATTTACCCTGGAAGATATGATTAAGACGGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAAACTTCTACTTTGCCTTCCCTTGCCCTTCGCTTATACTCTCTTGATTTAGCCATTATATACGAGAAAACGCCCAATTCAACTTTTACTGACAGCTCTGAACCTTCTGGCACAGCAGAAACGAGACCCCCAATGAATGTGGATACAGAGAAATCCAAAGGAAACCGGAAGTCAAACAGGAAAAGGAAGGAATCAGATGGTTGA 6621 0.4368 MIMELPDSTGGQRNLNAPPPPQHSNHHQDARSGLGIDLNEIPSPSSLFAETLPDSVTVDVVRAYHDNPGPPPGAPAAVPSGGLANCAACSKPCPAAAGSHHHLVVCDGCERGFHLACAGIRGGGRQAASLEEWVCGECVAAGVKSKRWPLGVKQLLDINAPPPSEAEGDGVGDGDAQDLRKHTLGDNYFGANPFVAPVTYSNFYNGNATGFQKASGGLTHADRVGFEDILNHTQSITRRFEEALKDFISEQRGVLEEGWRVEFRQSVSSTELYAVYCAPDGKIFDSVYEVACYLGLMSGFNSVESELRNERSLASLSGSLSRKKKSTRSAVVNGFVEKRGTMMNSNCKDPSSEGLNVECATTRGNIPKPFESGRKDDGHSCPPQFEDELPLQFNDFFVLSLGKVDVRPSYHDVNLICPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFPVPVGSTILSMSKFCQLVSQANEGERKTNASMDLDDGESIQMMLQDPCVPTENDVLSCSANFSIRDSHLSDVLRPVTGSVQDNTINSLAGNLEFNDGIGEILVEERSSCSAWRVISQKLVNVCKDICNQKGTLKFYCNHAKNETCLHQWDLGNVKRDTHFTSVDKFCSSLGSVGIPDVIYADSDLEGISEALRKWLGQDRFGLDVEFVQEVLEQLPGVESLQYELLNNRDNSSSLPTVGNGFLVVEWREGSKYQEEALQGLYRRTKKASLTEKSFKDGRHPPVGKPLCSRAPGELIGDIFQAWELLERFNEVLDLKEPLSLDDLEKELINPWFDGLDFLEKSERDMDESQVLISQGTDGNCRPLLSPRVETGPSGSMESSHAFIQMETEAMKEAAQVKLASFTYARCFGVTLTKAHNSLLRVLIRELLSRVAVLVDPNSEPGETRTRRGRRKDMDSGVSAKRTKLNMLPINELTWPELARRYILAFLTMDGNLESAEIIARESGKVFRCLRGDGGLLCGSLTGVAGMEADAQLLAEATKKIFGSLSRDSDVLTMEEESDAKGASEKKLANDGNVPEWAQMLEPVRKLPTNVGTRIRKCVYDALGKDPPEWAKKKLEHSISKEVYKGNASGPTKKAVLSVLADVAGEGLQSNPIKGQKRKIVISISDIMMKRCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGGSHEAFLEDVRELWNNVRVVFGDQPDLLELAEKLSQNFESLYNEEVVTNVQKFMEYAKLECLTAEMRKEVDDFIESMKETPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERTQVIGKCRSKKFQGEVNSLYLESLTHLSTVIEEKEYWEHSLGERTFLLKFLCDELLNSSMIRQHLEQCSELSAELHQKLRAHSAEWKNLKTREDILSTKAAKIDTFSLNTAGEVGLREGVTTLLTNTGKCLVQPHTAVDNPSNFGVFVDSLPSEETTKEKYRFDSVDKSMSVTNSDSDSQNMNSLDVEGQFRNVSGAVESQSTDKSPKSFPSPNMSQEINGSGGAAHAQGNHQKCEGRDISTPVTCQQGGVPVDASHTALNESEPYHLELNAIKRDISVLQDSITSVVSQLLRLSVRREFLGIDSIGRLYWASTLPGGRSRIVVDASAALLHGRGIPFSRDYVDKFSVLQHSSLSEKDSSQLRNALANSSPWIAYETDAEIEELLGWLDDSDPKERELKDSIMQGPRSRFQEFLNAQTEEQVEDRGPISMPINREKTVSNSLVTKATSLLEKKYGPFFEWDIEMSKKQNKKSRTTNDEKLFRCECLEPIWSDRRHCTYCHKTVSSDVEFDGHNDGKCNAGLPVAEKNRNKIGSSKGKGNLRCDTSREKFRADAETAGTKVGGCSKLSSRLIKFSNEESTCPFNFEDICSKFETSESNRDLVKEIGLIGSDGIPSFVPSVSPLVSEYTRFSTPKDDDTIGVLSKPTETRGSQGNTDGAGACLDHSSGISTGRLAANEINKSNKSSSGEQRDGKFSFCGPASDMGVDGCCVVPLSSLKPLVGKVSHILRQLKINLLDMDAALPAFALRPSKAESERRQAWRAFVKSAETIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKTSTLPSLALRLYSLDLAIIYEKTPNSTFTDSSEPSGTAETRPPMNVDTEKSKGNRKSNRKRKESDG* 2207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00187 2206 MobiDBLite consensus disorder prediction 899 916 - -
Phac4g00187 2206 ProSiteProfiles Zinc finger PHD-type profile. 1278 1328 IPR019787 -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 2185 2206 - -
Phac4g00187 2206 ProSiteProfiles FYR domain FYRN motif profile. 388 441 IPR003888 GO:0005634
Phac4g00187 2206 ProSiteProfiles Zinc finger PHD-type profile. 83 141 IPR019787 -
Phac4g00187 2206 SUPERFAMILY FYVE/PHD zinc finger 1269 1330 IPR011011 -
Phac4g00187 2206 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1360 1404 IPR028942 -
Phac4g00187 2206 ProSitePatterns Zinc finger PHD-type signature. 1281 1325 IPR019786 -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 1981 1996 - -
Phac4g00187 2206 CDD Bromodomain 1126 1233 - -
Phac4g00187 2206 Gene3D - 389 501 - -
Phac4g00187 2206 PANTHER OS02G0192300 PROTEIN 21 2202 - -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 2166 2206 - -
Phac4g00187 2206 CDD PHD1_Lid2p_like 1280 1325 - -
Phac4g00187 2206 Pfam Bromodomain 1169 1224 IPR001487 GO:0005515
Phac4g00187 2206 Gene3D - 1122 1245 IPR036427 GO:0005515
Phac4g00187 2206 ProSiteProfiles Bromodomain profile. 1171 1219 IPR001487 GO:0005515
Phac4g00187 2206 Pfam PHD-finger 1280 1326 IPR019787 -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 1 37 - -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 896 916 - -
Phac4g00187 2206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 144 IPR013083 -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 1535 1565 - -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 1535 1579 - -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 1972 1996 - -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 9 29 - -
Phac4g00187 2206 SMART PHD_3 1280 1326 IPR001965 -
Phac4g00187 2206 SMART PHD_3 85 139 IPR001965 -
Phac4g00187 2206 MobiDBLite consensus disorder prediction 2166 2184 - -
Phac4g00187 2206 SUPERFAMILY FYVE/PHD zinc finger 84 150 IPR011011 -
Phac4g00187 2206 Pfam Methyl-CpG binding domain 246 297 IPR001739 GO:0003677
Phac4g00187 2206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1280 1327 IPR013083 -
Phac4g00187 2206 ProSitePatterns Zinc finger PHD-type signature. 86 138 IPR019786 -
Phac4g00187 2206 SUPERFAMILY Bromodomain 1115 1235 IPR036427 GO:0005515
Phac4g00187 2206 CDD PHD_SF 86 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00187 Phac-Chr4 2653170 2665987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00187 28 2206 C2H2 Transcription Factor Family AT3G01460 44.617 0.0 1715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac4g00187 Bromodomain 4.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00187 K22768 - gmx:100820223 3547.67