Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00105 ATGGCTGCCACAGCAACTGCCTCTTCAATGGGTCCGCGGTATGCACCACCAGATCCGACCCTCCCTAAACCATGGAAGGGTCTTGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAATCCCGAGACCAATGTCACCCAGTATGAGAGGCCATCGAGCTCAGCTGCCCTGCCAAAGTCTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACATGTGTCTCAAGGATCGCAACGTGGTCATAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGGTCAAATGAAGCTGGATCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTACAGTTCTCATAGTGTGCCAACTGTAACAAATGCTGCTGCCAGTGTTAACTATCCTGTCAAAGGTCATGGGGCATCAGACGCTGCAGCTGTACTATCTCCCGAGTCTTATCGAAGTCGACATGAAATAACTGTGACTGGAGACAACGTGCCTCCACCTCTTGCATCATTTGGGTCTACAGGCTTTCCACCGGAGCTTCTGAGAGAGGTACAAAATGCTGGTTTCGCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCAAAAACAGGTTCAGGAAAAACCTTGGGATATTTAATTCCTGCATTTATTCACCTCAAGCGCTGTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTTCTTTCACCAACAAGAGAGTTGGCAACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCATCGAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCGAAGGGTCCTCAACTCAGAGACATTGACCGTGGAGCAGATATTGTAGTAGCCACACCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGGATTAGTCTTCAGCAAGTCTCTTATCTGGTACTAGATGAGGCAGACCGGATGCTGGATATGGGTTTCGAACCTCAAATTAGGAAAATTGTTAATGAGGTGCCTAATCGCAGGCAAACACTCATGTATACTGCAACGTGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTACTGGTGAAACCTGTCCAGGTGAACATTGGCAATGTAGATGAGCTTGTTGCCAACAAGTCCATTACTCAGCATATTGAAGTATTGCCCCTGATGGAGAAACAGAGACGTCTGGAACATATTTTACGTTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATTTGACACGTCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAGTCAGTTCCGAACTGGGAGGTCACCTGTTCTTGTAGCTACAGATGTTGCTGCACGGGGACTTGATATCAAGGACATTAGGGTGGTTGTCAATTACGACTTCCCCACAGGGGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGGAGAGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAGACCAGAAAGTTCCTCCAGAACTTCGTGATATGTCGTTACGGGGTGGCGGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGAAGAGGTGGACGTGGTGACTCAGGATATGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGGGGTGACTATGGAGGATATGGTGGAAGAGGTAGTGACTCAAATTATGGAGGTAGGGGGAATGCTTCTGGCAGAGGAGGCCGTGGTTTTGACTATGACTCTCAAAGGAATGATCGGGGTGGGAGTCCAGAGAAGGGATCTAGATGGAGTGATCGGTACAAAGGCGTGAACCGTGAACGTAGTCGTAGCCCTGACAGGGCCGCACTACCTCAACATTCCCAAAGCAGCTTTCACAAGTCAATGATGGAACGTGGTGGATGGGGTGGTGATAGTGATCGCAATAAGAGCAATTCTAATAACCGAGATCGAAGCCGCAGTCCTAGCCCCTATAGACAGGAGAGGACCCAACGATCCCCAGTTCAGAGTTTTCATCGATCCATGATGGGATCCCCACGGCAACGTCCACGCAGTCCTAGGTCTAATAATACTCCTTCAAAAGATTGGTACAATGGAGAGGTGGAGGAAGGCATGATTCCAGAGGAAGAAGGAATTATAGGTCAGGGTCAGGGTGGTGGCGATTAG 2268 0.4757 MAATATASSMGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAALPKSSSVPSSSVQVQHVSQGSQRGHSPDFSDRYDRNGSGGSNEAGSRNNQSSKGGSYSSHSVPTVTNAAASVNYPVKGHGASDAAAVLSPESYRSRHEITVTGDNVPPPLASFGSTGFPPELLREVQNAGFAAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLQQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMYTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHIEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGADQKVPPELRDMSLRGGGGMGRSRRWGSGGRGGRGDSGYGGRNNDSGYGGRGDYGGYGGRGSDSNYGGRGNASGRGGRGFDYDSQRNDRGGSPEKGSRWSDRYKGVNRERSRSPDRAALPQHSQSSFHKSMMERGGWGGDSDRNKSNSNNRDRSRSPSPYRQERTQRSPVQSFHRSMMGSPRQRPRSPRSNNTPSKDWYNGEVEEGMIPEEEGIIGQGQGGGD* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00105 755 SMART ww_5 20 53 IPR001202 GO:0005515
Phac4g00105 755 MobiDBLite consensus disorder prediction 48 118 - -
Phac4g00105 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Phac4g00105 755 Pfam Helicase conserved C-terminal domain 398 506 IPR001650 -
Phac4g00105 755 MobiDBLite consensus disorder prediction 613 648 - -
Phac4g00105 755 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Phac4g00105 755 MobiDBLite consensus disorder prediction 48 82 - -
Phac4g00105 755 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 116 545 - -
Phac4g00105 755 MobiDBLite consensus disorder prediction 539 755 - -
Phac4g00105 755 Gene3D - 143 376 IPR027417 -
Phac4g00105 755 MobiDBLite consensus disorder prediction 693 730 - -
Phac4g00105 755 Gene3D - 377 547 IPR027417 -
Phac4g00105 755 FunFam ATP-dependent RNA helicase RhlB 376 548 - -
Phac4g00105 755 CDD SF2_C_DEAD 386 515 - -
Phac4g00105 755 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Phac4g00105 755 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Phac4g00105 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 523 IPR027417 -
Phac4g00105 755 CDD WW 22 51 IPR001202 GO:0005515
Phac4g00105 755 SMART ultradead3 186 389 IPR014001 -
Phac4g00105 755 MobiDBLite consensus disorder prediction 667 692 - -
Phac4g00105 755 SUPERFAMILY WW domain 12 52 IPR036020 GO:0005515
Phac4g00105 755 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Phac4g00105 755 MobiDBLite consensus disorder prediction 91 118 - -
Phac4g00105 755 FunFam probable ATP-dependent RNA helicase DDX17 139 375 - -
Phac4g00105 755 MobiDBLite consensus disorder prediction 1 26 - -
Phac4g00105 755 SMART helicmild6 426 506 IPR001650 -
Phac4g00105 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 372 IPR014001 -
Phac4g00105 755 Pfam DEAD/DEAH box helicase 191 361 IPR011545 GO:0003676|GO:0005524
Phac4g00105 755 Pfam WW domain 21 51 IPR001202 GO:0005515
Phac4g00105 755 Gene3D - 17 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00105 Phac-Chr4 1590557 1596328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00105 165 544 Eukaryotic Initiation Factors Gene Family AT3G19760 33.247 1.01e-65 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00105 K12823 - gmx:100816455 1083.94