Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00104 ATGGGCCCCACTGCATTGGTTCTTTCACCAACAAGAGAGTTGGCAACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCATCGAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCGAAGGGTCCTCAACTCAGAGACATTGACCGTGGAGCAGATATTGTAGTAGCCACACCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGGATTAGTCTTCAGCAAGTCTCTTATCTGGTACTAGATGAGGCAGACCGGATGCTGGATATGGGTTTCGAACCTCAAATTAGGAAAATTGTTAATGAGGTGCCTAATCGCAGGCAAACACTCATGTATACTGCAACGTGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTACTGGTGAAACCTGTCCAGGTGAACATTGGCAATGTAGATGAGCTTGTTGCCAACAAGTCCATTACTCAGCATATTGAAGTATTGCCCCTGATGGAGAAACAGAGACGTCTGGAACATATTTTACGTTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATTTGACACGTCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAGTCAGTTCCGAACTGGGAGGTCACCTGTTCTTGTAGCTACAGATGTTGCTGCACGGGGACTTGATATCAAGGACATTAGGGTGGTTGTCAATTACGACTTCCCCACAGGGGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGGAGAGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAGACCAGAAAGTTCCTCCAGAACTTCGTGATATGTCGTTACGGGGTGGCGGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGAAGAGGTGGACGTGGTGACTCAGGATATGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGGGGTGACTATGGAGGATATGGTGGAAGAGGTAGTGACTCAAATTATGGAGGTAGGGGGAATGCTTCTGGCAGAGGAGGCCGTGGTTTTGACTATGACTCTCAAAGGAATGATCGGGGTGGGAGTCCAGAGAAGGGATCTAGATGGAGTGATCGGTACAAAGGCGTGAACCGTGAACGTAGTCGTAGCCCTGACAGGGCCGCACTACCTCAACATTCCCAAAGCAGCTTTCACAAGTCAATGATGGAACGTGGTGGATGGGGTGGTGATAGTGATCGCAATAAGAGCAATTCTAATAACCGAGATCGAAGCCGCAGTCCTAGCCCCTATAGACAGGAGAGGACCCAACGATCCCCAGTTCAGAGTTTTCATCGATCCATGATGGGATCCCCACGGCAACGTCCACGCAGTCCTAGGTCTAATAATACTCCTTCAAAAGATTGGTACAATGGAGAGGTGGAGGAAGGCATGATTCCAGAGGAAGAAGGAATTATAGGTCAGGGTCAGGGTGGTGGCGATTAG 1557 0.474 MGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLQQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMYTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHIEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGADQKVPPELRDMSLRGGGGMGRSRRWGSGGRGGRGDSGYGGRNNDSGYGGRGDYGGYGGRGSDSNYGGRGNASGRGGRGFDYDSQRNDRGGSPEKGSRWSDRYKGVNRERSRSPDRAALPQHSQSSFHKSMMERGGWGGDSDRNKSNSNNRDRSRSPSPYRQERTQRSPVQSFHRSMMGSPRQRPRSPRSNNTPSKDWYNGEVEEGMIPEEEGIIGQGQGGGD* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00104 518 Gene3D - 140 310 IPR027417 -
Phac4g00104 518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 135 IPR014001 -
Phac4g00104 518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 164 308 IPR001650 -
Phac4g00104 518 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 81 89 IPR000629 -
Phac4g00104 518 Pfam DEAD/DEAH box helicase 2 124 IPR011545 GO:0003676|GO:0005524
Phac4g00104 518 CDD SF2_C_DEAD 149 278 - -
Phac4g00104 518 MobiDBLite consensus disorder prediction 430 455 - -
Phac4g00104 518 SMART helicmild6 189 269 IPR001650 -
Phac4g00104 518 Gene3D - 1 139 IPR027417 -
Phac4g00104 518 FunFam ATP-dependent RNA helicase RhlB 139 311 - -
Phac4g00104 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 286 IPR027417 -
Phac4g00104 518 SMART ultradead3 2 152 IPR014001 -
Phac4g00104 518 MobiDBLite consensus disorder prediction 302 518 - -
Phac4g00104 518 MobiDBLite consensus disorder prediction 456 493 - -
Phac4g00104 518 MobiDBLite consensus disorder prediction 376 411 - -
Phac4g00104 518 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 308 - -
Phac4g00104 518 Pfam Helicase conserved C-terminal domain 161 269 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00104 Phac-Chr4 1590557 1596328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00104 5 307 Eukaryotic Initiation Factors Gene Family AT3G19760 33.882 3.57e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00104 K12823 - gmx:100816455 715.687