LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac4g00097	ATGGCTTTCAAATGTCAGAGCAACCACTACAAGTACAAGTGCAAGAAATCATCTTTTGAGGTTGTGATCTTCACAGTGGCCACCCTCTTGTGTTTCTCCCACTCAGCACTATCTGATCCAAGAATCTCTGAAGTGGGGTCCTTCTGTGGCACTCACAAGGCATCACCAAGTGGTAACTACTACCCCATTTTCACCAAAGAAATGGAAAAGCTTCATGAGCTTGTGCAGAAAAACAACTGGGGCACTCACTCTGAGGGGCTTTCATCAGCCACTCCCATCTATGCTTTGGCACAGTGCTTCCAAGACCTTTCCAACCTTGATTGTCTTCAGTGCTTTGCAACCAGCCGCACCAAGCTACCTCGCTGCCTCCCTTCAGTTTCTGCTCACATTTACCTTGATGGCTGCTTCCTTCGCTATGACAACTACAGTTTCTACTCTGAGGACACTGACCCTTTGAGGGACACAGTGAACTGCACCACACAGTATGGTGGTGTGGCTGGTGAGGCTGAGAGGTTGGTGTTTGGCAATAGTGTTGGGAAAGTCGTTGAGAATGTTGTGAGGGTGGCAGTGAATGAGGGAAGAGGGTTTGCAGTGGGAGAAGGTGAGGGAGTTTACGCCTTGGCACAGTGCTGGAAAACTGTTGGGGGAAAAGGGTGTAGAGATTGCTTGAAGAAAGCTGAAAATGAGGTTAGAGGGTGTTTGCCTAAGAAGGAAGGGAGGGCCTTGAATTCTGGCTGTTATTTGAGATATTCTACTGTCAAGTTCTACAATCAAGGAGGTGAAGATGGGGAAGGAGATGATTCTTCTAGAAAACGAATCATCATTACAGCAGTGTCAGTCTTGGCTGCAGCTGTTGTAGTTCTCTCTCTCTTGGTCACTTATGTGGCCTTCACCAAAAAGAGAAAAAACAACAATTTCATTGAGATTCCCTCTTATTTGAAGAACTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCCACAGATTATTTCAGCTCTCCAAGAAAATTAGGCCAAGGAGGAGCTGGTTCTGTATTCAAAGGGACTCTCCCCAATGGGAAAGATGTTGCTGTGAAGAGATTGGTCTTCAATAATAGGCAATGGGTGGATGATTTCTTCAATGAAGTGAATTTAATCAGTGGAATAAATCACAAAAACCTTGTCAAGCTATTGGGTTGCAGTATTGAAGGCCCTGAGAGCCTCATTGTGTATGAGTACCTACCTAACAAGAGCTTAGACCATTTCCTTTTTGAAAAGGACAAAACAAGGATTCTAAAATGGAAGCAAAGGTTTGAAATAGTTGTTGGAATTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCTGAAATAAGAATCATCCATAGAGACATCAAAAGTAGCAATGTTCTTCTTGATGAGAATCTCAACCCCAAGATTGCAGATTTTGGTCTTGCCAGGTGTTTTGGTGCTGATAAAACACATCTAAGCACAGGAATTGCTGGAACACTAGGTTACATGGCTCCAGAGTATCTCATTCAAGGACAACTTACAGATAAAGCAGATGTTTATAGTTTTGGAGTACTTGTTCTGGAGACTGCAAGTGGCAGGAAGAACAATGTCTTCCGTGAGGATTCTGATTCCCTTTTGCAAACAGTTTGGAAACTTTACCAATCAAACAGATTGGGTGAAGCTGTTGATCCATGCTTGGGAAATGAGTTTCCTGCAAGAGAAGCATCAAGGGTGTTTCAAATTGGATTACTGTGCACACAAGCTTCTGCTTCCCTTAGGCCATCCATGGCTCAAGTTGCTTGCATGTTAAGCAATTCAAATTTGGATGTCCCTATACCAAAACAACCCCCATTTTTGAACTCTAGATTGCTGAATCAAACACCTCCATTAGGTTTTAGCATAGATAACTCCTCATCAAATACATTTAAAAAGATTGGTGTTTCCTACAGCCCCACTCATTCCTCTAGTTCATGCAGCTTGATTAGGTCATCCAAAAGTGAGGAAACAATTTTGGAAGCTTGA	2013	0.4307	MAFKCQSNHYKYKCKKSSFEVVIFTVATLLCFSHSALSDPRISEVGSFCGTHKASPSGNYYPIFTKEMEKLHELVQKNNWGTHSEGLSSATPIYALAQCFQDLSNLDCLQCFATSRTKLPRCLPSVSAHIYLDGCFLRYDNYSFYSEDTDPLRDTVNCTTQYGGVAGEAERLVFGNSVGKVVENVVRVAVNEGRGFAVGEGEGVYALAQCWKTVGGKGCRDCLKKAENEVRGCLPKKEGRALNSGCYLRYSTVKFYNQGGEDGEGDDSSRKRIIITAVSVLAAAVVVLSLLVTYVAFTKKRKNNNFIEIPSYLKNSSLNYKYETLEKATDYFSSPRKLGQGGAGSVFKGTLPNGKDVAVKRLVFNNRQWVDDFFNEVNLISGINHKNLVKLLGCSIEGPESLIVYEYLPNKSLDHFLFEKDKTRILKWKQRFEIVVGIAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLNPKIADFGLARCFGADKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSFGVLVLETASGRKNNVFREDSDSLLQTVWKLYQSNRLGEAVDPCLGNEFPAREASRVFQIGLLCTQASASLRPSMAQVACMLSNSNLDVPIPKQPPFLNSRLLNQTPPLGFSIDNSSSNTFKKIGVSYSPTHSSSSCSLIRSSKSEETILEA*	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac4g00097	670	Gene3D	-	168	255	IPR038408	-
	Phac4g00097	670	Gene3D	-	43	144	IPR038408	-
	Phac4g00097	670	Gene3D	Transferase(Phosphotransferase) domain 1	408	607	-	-
	Phac4g00097	670	SMART	serkin_6	332	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac4g00097	670	Gene3D	Phosphorylase Kinase; domain 1	293	407	-	-
	Phac4g00097	670	FunFam	Cysteine-rich receptor-like protein kinase 2	42	144	-	-
	Phac4g00097	670	FunFam	Cysteine-rich receptor-like protein kinase 2	298	407	-	-
	Phac4g00097	670	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	453	465	IPR008271	GO:0004672\|GO:0006468
	Phac4g00097	670	ProSiteProfiles	Protein kinase domain profile.	332	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac4g00097	670	Pfam	Protein tyrosine and serine/threonine kinase	336	597	IPR001245	GO:0004672\|GO:0006468
	Phac4g00097	670	FunFam	Cysteine-rich receptor-like protein kinase 3	157	255	-	-
	Phac4g00097	670	CDD	STKc_IRAK	338	600	-	-
	Phac4g00097	670	FunFam	Cysteine-rich receptor-like protein kinase 2	408	608	-	-
	Phac4g00097	670	ProSiteProfiles	Gnk2-homologous domain profile.	153	255	IPR002902	-
	Phac4g00097	670	Pfam	Salt stress response/antifungal	173	252	IPR002902	-
	Phac4g00097	670	Pfam	Salt stress response/antifungal	58	142	IPR002902	-
	Phac4g00097	670	ProSiteProfiles	Gnk2-homologous domain profile.	42	144	IPR002902	-
	Phac4g00097	670	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	94	621	-	-
	Phac4g00097	670	SUPERFAMILY	Protein kinase-like (PK-like)	318	620	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac4g00097	Phac-Chr4	1408710	1413912	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac4g00097	15	497	Receptor kinase-like Gene Family	AT5G40380	54.545	3.39e-178	514

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Phac4g00097		PK_Tyr_Ser-Thr	1.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac4g00097	-		-	gmx:100819689	1097.03