LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac4g00085	ATGTCTGGGTTGGAGGAATTGAGGAAAAAGCTTGCACCTTTATTCGATGCCGAGAAGGGTTTCTCATCAAGTTCAACCTTGGACCCCTGTGATTCTTACACATTTTCGGATGGTGGAACTGTGAACTTGTTGAGTAGATCATATGGGGTGTACAATATCAACGAGCTTGGGTTGCAGAAGTGCACATCTTCAAGGTCTTTGGATGTAACTGATCAGAGTGAGAAAACGTACAAGTGTGCTTCCCAAGAAATGAGGATTTTTGGAGCAATTGGTAGTGGTGCCAGTAGTGTTGTGCAGAGAGCCATGCATATACCAACACATAGGATTCTGGCTCTGAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTATGTGAAGCACCTTGTTATGAGGGTCTTGTAGAATTTCATGGAGCATTTTACACCCCAGATTCTGGACAGATAAGCATAGCTTTGGAGTATATGGATGGAGGATCACTTGCAGATATCTTGCGAATGAATAGAAGGATACCCGAACCTATTCTGTCGTTCATGTTTCAGAAGCTCCTACACGGTCTAAGCTATCTGCATGGAGTCAGACATCTAGTTCACAGAGACATAAAGCCGGCGAATCTATTGGTAAATTTGAAGGGAGAGCCAAAAATTACTGATTTTGGTATCAGTGCTGGCTTAGAGAGTTCAGTGGCAATGTGTGCTACATTTGTTGGAACTGTTACATACATGTCACCTGAGAGGATTCGAAATGAAAGCTATTCTTATCCGGCCGATATTTGGAGCCTTGGTCTTGCCCTTTTAGAGTGTGGAACTGGAGAATTCCCATATACAGCTAATGAAGGTCCTGTGAATCTTATGTTGCAGATCTTGGATGATCCATCACCATCACCATCAAAAAACAAGTTTTCCCCAGAATTCTGCTCCTTTGTTGATGCTTGTCTGCAAAAGGATCCAGACAATAGGCCAACAGCAGAGCAGCTGCTTTTGAACCCTTTCATCACAAAGTATGAGAAGGAAAAGGTAGATTTAGCCGGATTCGTTCGAAGCGTTTTTGATCCTACACAAAGAATGAAGGACTTGGCAGACATGTTGACAATACATTATTACTTGCTATTTGATGGACCTGATGATCTGTGGCAACATACAAGGAACTTATATAACGAAACCTCAATTTTCAGTTTCTCTGGAAAACAACACAGTGGTCCAAATAACATCTTTGCATCTCTATCAAGTATTAGAGCTACACTGGTTGGTGAGTGGCCTCCTGAGAAGTTGGTGCATGTTGTTGAGAAGCTTCAATGCCGTGCTCATGGTGAAGATGGAGTTGCAATCAGAGTTTCAGGATCCTTTATGATTGGAAACCAGTTCCTGATATGTGGAGATGGCATTCAAGTTGAGGGGTTGCCAAACTTCAAGGATCTTGGAATTGATATTGCTAGCAAAAGAATGGGAACATTTCATGAACAATTCTTGGTGGAACCAACAAGTCTTATTGGGTGCTATTCCATTGTGAAACAAGAGCTATACATTAATCAGTAA	1560	0.4179	MSGLEELRKKLAPLFDAEKGFSSSSTLDPCDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTSSRSLDVTDQSEKTYKCASQEMRIFGAIGSGASSVVQRAMHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMNRRIPEPILSFMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLESSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKNKFSPEFCSFVDACLQKDPDNRPTAEQLLLNPFITKYEKEKVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGPDDLWQHTRNLYNETSIFSFSGKQHSGPNNIFASLSSIRATLVGEWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFMIGNQFLICGDGIQVEGLPNFKDLGIDIASKRMGTFHEQFLVEPTSLIGCYSIVKQELYINQ*	520

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phac4g00085	519	Pfam	Protein kinase domain	88	340	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Phac4g00085	519	ProSiteProfiles	Protein kinase domain profile.	84	340	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Phac4g00085	519	FunFam	Mitogen-activated protein kinase kinase 3	364	518	-	-
Phac4g00085	519	CDD	PKc_MAPKK_plant_like	85	345	-	-
Phac4g00085	519	ProSitePatterns	Protein kinases ATP-binding region signature.	90	113	IPR017441	GO:0005524
Phac4g00085	519	Gene3D	Phosphorylase Kinase; domain 1	52	165	-	-
Phac4g00085	519	SMART	serkin_6	84	340	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Phac4g00085	519	SUPERFAMILY	NTF2-like	365	462	IPR032710	-
Phac4g00085	519	PANTHER	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED	23	397	-	-
Phac4g00085	519	ProSiteProfiles	Nuclear transport factor 2 domain profile.	367	517	IPR018222	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac4g00085	Phac-Chr4	1361850	1366021	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac4g00085	30	519	MAP Kinase Kinase Gene Family	AT5G40440	78.163	0.0	814

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Phac4g00085		Pkinase	6.7e-58	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac4g00085	K20607		-	gmx:100820176	970.304

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