Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00080 ATGGGGACCCAACTGGGGGAGGATCCCTTTGATGTCATTACTTTGGAGAAGGGAAAGGTGGGAACTTTTGTGTTTGAGGATGGAAGTGATGAGGTTTACGACGTTGTTGGGGTTCTGGGTGGGAGGCAGAAGATTGTAAAAGGGACTCAAAGTGCAGAGTACATCATTAACCTCCACAAGCGCCTCCATGGCTGCACATTTAAGAAGATGAGGAAGTTTGCTCAGAAGGCCATGGGAACTAATGATGTGAATCTGAACAAGTTGCTCAGGAGTGTTCGAAGGAGAATTAGGGTAAGAAATGCTCGTAAGAGGAATGATGATGAAGATGCCAAGGAACCCTTGTCACTGTTGTTGAAACCTGCTTCTGTGATGAGTCAAAATTTGTGTTCTCATACATGCCTTACCATCATGAAAGGCTTGTTTTTTAAGTTCTTCAATATAAAATTTTAG 450 0.4311 MGTQLGEDPFDVITLEKGKVGTFVFEDGSDEVYDVVGVLGGRQKIVKGTQSAEYIINLHKRLHGCTFKKMRKFAQKAMGTNDVNLNKLLRSVRRRIRVRNARKRNDDEDAKEPLSLLLKPASVMSQNLCSHTCLTIMKGLFFKFFNIKF* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00080 149 Gene3D - 46 134 IPR023621 -
Phac4g00080 149 SMART Ribosomal_L31e_2 47 113 IPR000054 GO:0003735|GO:0005840|GO:0006412
Phac4g00080 149 SUPERFAMILY Ribosomal protein L31e 51 113 IPR023621 -
Phac4g00080 149 PANTHER 60S RIBOSOMAL PROTEIN L31 50 123 IPR000054 GO:0003735|GO:0005840|GO:0006412
Phac4g00080 149 Pfam Ribosomal protein L31e 52 112 IPR000054 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00080 Phac-Chr4 1326718 1327352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00080 53 129 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 50.000 1.28e-21 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00080 K02910 - csav:115705881 85.8853