Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00066 ATGGAATCACCCGGTAACGACCAATTGGTGGGTGCCTCTGACCCCAACGACGTCGTTGTACCCTTCTCCCACAGAGAAGAACCCCACAATTCCCAACCCCTCACCGGCGACGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTTATCAAGCACTTTGGGAAATATGGTGAGATTACGGATTCGGTCATCATGAAGGACAGGAAAACTGGGCAACCTCGTGGATTTGGGTTTATAACGTATGCCGATCCCTCGGTGGTTGATAAAGTCATTGAGGACACTCATGTCATCAATGGAAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACTCGCTATGGTGAAGTGAAAGATCACCAAATAATGCGGGACCACTCCACCAACAGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAAAAGGCTGAACCAAAGAAGCCAAATTCTGCACCTCCATCATCCAAGCGTTACAATGATTCAAGGTCTTCATACAGCAGTGCTGGATACGGAGATGCCTATGATGGATTTGGTGGCAGTTTTGGAGTAGGGGGTGGATATAGGTCAGGTGGTGCTTATGGTGGCGGTAGGGGTGGTGCTTATGGTGCCTATGGAAGTGAATTTGGTGGTTATGGAGGATATGCTGGTGCGATGGGGCCGTATAGAGGAGATCCCTCCCTCGGGTATGCTGGTCGTTATGGTGGAAGCTTTAGTAGAGGGTATGATCTCGGTGGGTACGGTGGAGCTAGTGAGAATTATGGGGCATATGGTGGAGGTGGTGGTTCTTCTGGTGGTGCTAGTGCCGGTGCCGGTGCCTATCAAAGTGGCTATGATGGCAACCTAGCAGGTGGATATGGAGGGTCTAGTGGAGGTGCCTTCTATGGGAGCAGTAGAGGTGGTTATGGTGCTGGCCGATACCATCCTTATGGAAGATAA 1125 0.48 MESPGNDQLVGASDPNDVVVPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSSAGYGDAYDGFGGSFGVGGGYRSGGAYGGGRGGAYGAYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGASENYGAYGGGGGSSGGASAGAGAYQSGYDGNLAGGYGGSSGGAFYGSSRGGYGAGRYHPYGR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00066 374 MobiDBLite consensus disorder prediction 1 39 - -
Phac4g00066 374 MobiDBLite consensus disorder prediction 205 226 - -
Phac4g00066 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Phac4g00066 374 SMART rrm1_1 131 204 IPR000504 GO:0003723
Phac4g00066 374 SMART rrm1_1 43 114 IPR000504 GO:0003723
Phac4g00066 374 Gene3D - 130 212 IPR012677 -
Phac4g00066 374 Gene3D - 42 121 IPR012677 -
Phac4g00066 374 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 122 - -
Phac4g00066 374 SUPERFAMILY RNA-binding domain, RBD 120 218 IPR035979 GO:0003676
Phac4g00066 374 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Phac4g00066 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Phac4g00066 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Phac4g00066 374 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 250 - -
Phac4g00066 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Phac4g00066 374 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 31 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00066 Phac-Chr4 1105815 1109317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00066 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 5.59e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00066 K12741 - gmx:100793209 494.197