LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac4g00058	ATGGCAAAAGAGGTTGTTGAAAGCCTTTGGAATGGTGGTGAAGAATCTCAAATTCAAGCAGCTTTGGAGCTTTGTAGATTAAGCAGTAGGCAGAGGCAAAAGTTGGAGGAAAGTAGAGTCATGGTTCCTCTTGTTTCCATGCTTCATTCTGAAAACTATGAAGCAATAGAAGCTGCTCTCTGTGCTTTGCTCAGTCTTTCCTTTGGCTGTGAGAGAAACAAGATTCGGATCATCAAATCTGGAGCTTTGCCAGTTCTGCTGAGTCTCCTCCATGGTGATAGCCAGAGAGTGGCACATTTGACTTTGGCAGCCATGCTAACTCTCTCCTCTTGCAAAGCAAATAAGGTAGCAATTGCTTCTTCTGGGGCTGTTCAACTCTTGGCTGAGTTTGTGAACAGCAGTTGTAGCACTCAGTCTCAGCTTGATGCTATTGCTACTCTACACAATCTTGCAACCTGCCAAGAGATTGTTCCATTGATTGTCTCATCTGGGGTCATGCTCTCTTTGCTTGAACTGATCCACACCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAACCTCATGTCTTCATCAGAGAGTGCACTATGTGAGGCTGCTAGCACCATGGGAGCAATCAGGATACTGGTTGAGACTGTTGAAGATGGTTCTTCACTGAGCAAAGAGCATGCAGTGTGCATACTTCTCCTTGTATGCCAGAGCTGCAGAGAGAAGTATAGAGGGTTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTGGATGGAACTTGGAGAGCCAAATCCATGGCTAGAGAACTGTTGTTGCTTCTGAGGGACTGCTCCAATTATAGCTCAAGATGTAAACAGATTAATCATGAGCTGATAGAAAGGATAATGGATGAAATTGAAGCAGAAGGAGAGACATTTGCAGATACTACTTTGAGGCTAGTAGAGGAGATGATTGCAAAGCTCCATGCTTAG	987	0.4428	MAKEVVESLWNGGEESQIQAALELCRLSSRQRQKLEESRVMVPLVSMLHSENYEAIEAALCALLSLSFGCERNKIRIIKSGALPVLLSLLHGDSQRVAHLTLAAMLTLSSCKANKVAIASSGAVQLLAEFVNSSCSTQSQLDAIATLHNLATCQEIVPLIVSSGVMLSLLELIHTSVKSSPLVEKAIGLLENLMSSSESALCEAASTMGAIRILVETVEDGSSLSKEHAVCILLLVCQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSMARELLLLLRDCSNYSSRCKQINHELIERIMDEIEAEGETFADTTLRLVEEMIAKLHA*	329

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac4g00058	328	PANTHER	U BOX DOMAIN-CONTAINING	4	282	-	-
	Phac4g00058	328	FunFam	U-box domain-containing protein 4	3	197	-	-
	Phac4g00058	328	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	164	199	IPR000225	GO:0005515
	Phac4g00058	328	SMART	arm_5	28	68	IPR000225	GO:0005515
	Phac4g00058	328	SMART	arm_5	70	110	IPR000225	GO:0005515
	Phac4g00058	328	SMART	arm_5	153	195	IPR000225	GO:0005515
	Phac4g00058	328	SMART	arm_5	111	152	IPR000225	GO:0005515
	Phac4g00058	328	Gene3D	-	2	327	IPR011989	-
	Phac4g00058	328	FunFam	U-box domain-containing protein 4	201	317	-	-
	Phac4g00058	328	SUPERFAMILY	ARM repeat	4	304	IPR016024	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac4g00058	Phac-Chr4	1086777	1088782	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac4g00058	4	281	U-box Gene Family	AT3G54790	32.979	4.74e-27	110

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac4g00058	-		-	gmx:100778534	524.242

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