Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00038 ATGCTGAAACCCACTTCTCTTTCTCTATCCAACGTTTCATCTTTTCTCTTCTGCCATTGTCACAGAAGACTCTTTCCAACGCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTTTCCCTTTTCACGCCCAAGACCTCTCTCCACAACCCCATATCCTCTCCAATATGAACTCATCATCAATCGTCCAGCTTACCCTCGCCCACCAACTGTTCGACCAATTGACTCACCGGAACCCGACGACCCCACTTCCGAGACTCGCCCCCAACTGGACAAGGCGCAGAGGAAGTACTACAACAAGCGCAGGAAGAGGATGTACGGCTCCGATTCCGACCAAGACGAGGCGGGGCGCCGCGACGAAGCGTTTGTGGAGTTGAAGCCCGAGGTGGTGGAATTCCCCACGCTGCACAAGAGGGAGGAAGAGTTGTACTTCCACGACGCGTTTACGTATCCTTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGATCAATCGCTTGACAAGGCCTTTCTCCAACCGGGGCAGTCTAATGTGAATGCTGCAAATGTTAATGTTAATGCAGATGGGAAGGGCGAGGGTAGGAAGAAAGGTGTTGGTGTTGATGAGAAGTTGGTGTTTTTTGAGGGGAAAGAGAAGGGCGAGGAGGGTGAACGTGGAAGTAGAGAACTGAAGGAGAAGAAGGTTGAGGAGTTCTTCAAGGGTTTGAAGAAGGTTCCTGGTAGTGACAAGGATGTTCAAGTTGGAGAGCCTTTTCTTTCGTCAAGGAGGACTGGTCTTCCTCCTGTGTGGGATAGTCCGCATGGCACTGTGGTTTTGGTCAACAAACCGAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACGCTTGACCCAATGGCTACTGGTTTATTGATTGTATGTGTTGGCAAAGCAACGAAACTGGTAGACAGATATCAAGGAATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGACTCACCAGTCATTCAACGTGAGCCATGGGAGCATATCAAAGATGAGGATATAAAGAGGAATGCTTTGTCTTTTTGTGGTGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTTCAGTTTGACACGGAGCGTAGCTTAAGTGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGTCTCTTGACAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCTGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAAATTATCTCTAA 1491 0.4675 MLKPTSLSLSNVSSFLFCHCHRRLFPTLSSSSSSSSSSSFPFSRPRPLSTTPYPLQYELIINRPAYPRPPTVRPIDSPEPDDPTSETRPQLDKAQRKYYNKRRKRMYGSDSDQDEAGRRDEAFVELKPEVVEFPTLHKREEELYFHDAFTYPWEKDKHYKMVYQLEKKYFPDQSLDKAFLQPGQSNVNAANVNVNADGKGEGRKKGVGVDEKLVFFEGKEKGEEGERGSRELKEKKVEEFFKGLKKVPGSDKDVQVGEPFLSSRRTGLPPVWDSPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLSDRQNLIFRVTCSKGTYIRSLCADFGKSLDSCAHLTALRRDSIGQYSADDAWDFQELEEAITKNYL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00038 496 FunFam tRNA pseudouridine synthase B 273 495 - -
Phac4g00038 496 Gene3D Pseudouridine synthase 273 495 - -
Phac4g00038 496 Pfam tRNA pseudouridylate synthase B C-terminal domain 449 492 IPR032819 -
Phac4g00038 496 SUPERFAMILY Pseudouridine synthase 278 491 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phac4g00038 496 CDD PseudoU_synth_EcTruB 279 490 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phac4g00038 496 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 168 494 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phac4g00038 496 Hamap tRNA pseudouridine synthase B [truB]. 276 496 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phac4g00038 496 MobiDBLite consensus disorder prediction 104 119 - -
Phac4g00038 496 MobiDBLite consensus disorder prediction 79 96 - -
Phac4g00038 496 MobiDBLite consensus disorder prediction 65 119 - -
Phac4g00038 496 NCBIfam tRNA pseudouridine(55) synthase TruB 278 487 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phac4g00038 496 Pfam TruB family pseudouridylate synthase (N terminal domain) 298 448 IPR002501 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00038 Phac-Chr4 673718 678370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00038 279 470 NAC Transcription Factor Family AT3G57150 33.333 1.47e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00038 K03177 - gmx:100793939 722.235