Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04576 ATGGCTCAACCCACCACCAACGGCGATCTCAGTCAGCAGCAGGGCCAGCAGCAGCAGCAGCAGCAGTGGCCGCAGCAGCCGCATCAGTACCAGCACCAATGGATGGCTATGCAGTACCCGGCAACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCCTATGTTCACCCTCATTACCCCCCGCCGCCGCCCCCTCCCTCCCACCACCACCACCACAAACAGCCCGCCGCTTCCCCCGTCGCCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTTGTAGAGTTCTATACACGTCCGACGGCTGAGAAAGTTTTGCAGAACTATAATGGCACCATGATGCCAAACACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCCGGGGATAGGCGATCTTCGGATGCTACTTCTGATCTCTCAATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGTTGCAAGAGACTTTTGCGGGCAGATTTTCGTCTATTAAGGGTGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGCGATGAAAATGAGAGAACGAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGTAGGCCTATGAGAATAGGTGTTGCAACTCCGAAGAAAACTTATGGCTATCAACAACAATATTCTTCTCAAGCTGTCGTATTGGCTGGTGGAGGACACTCGGCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGAGATTCAAACAACACTACTATATTTGTTGGAGGGCTTGATTCTGACATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCCGTGGGGAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGATGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATTCCAATGGAGGCCACTATGGTGGCCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATCTAGCCATGCAACCTGCTGCTGCTGCAATTCAAGGTGCTTCCTGA 1281 0.5012 MAQPTTNGDLSQQQGQQQQQQQWPQQPHQYQHQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHPHYPPPPPPPSHHHHHKQPAASPVASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYTRPTAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEDAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGYGGHGFAVRQNQDLAMQPAAAAIQGAS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04576 426 Gene3D - 93 173 IPR012677 -
Phac3g04576 426 SUPERFAMILY RNA-binding domain, RBD 299 404 IPR035979 GO:0003676
Phac3g04576 426 SUPERFAMILY RNA-binding domain, RBD 185 292 IPR035979 GO:0003676
Phac3g04576 426 CDD RRM2_SECp43_like 187 266 - -
Phac3g04576 426 Gene3D - 175 281 IPR012677 -
Phac3g04576 426 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 384 - -
Phac3g04576 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Phac3g04576 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Phac3g04576 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 373 IPR000504 GO:0003723
Phac3g04576 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Phac3g04576 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 380 IPR000504 GO:0003723
Phac3g04576 426 FunFam Polyadenylate-binding protein RBP47B 175 278 - -
Phac3g04576 426 SUPERFAMILY RNA-binding domain, RBD 61 175 IPR035979 GO:0003676
Phac3g04576 426 FunFam Polyadenylate-binding protein RBP47B 93 173 - -
Phac3g04576 426 SMART rrm1_1 189 263 IPR000504 GO:0003723
Phac3g04576 426 SMART rrm1_1 95 170 IPR000504 GO:0003723
Phac3g04576 426 SMART rrm1_1 309 376 IPR000504 GO:0003723
Phac3g04576 426 MobiDBLite consensus disorder prediction 1 26 - -
Phac3g04576 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Phac3g04576 426 FunFam Polyadenylate-binding protein RBP47 290 406 - -
Phac3g04576 426 Gene3D - 288 412 IPR012677 -
Phac3g04576 426 MobiDBLite consensus disorder prediction 65 89 - -
Phac3g04576 426 CDD RRM1_SECp43_like 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04576 Phac-Chr3 43569331 43574363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04576 93 377 Eukaryotic Initiation Factors Gene Family AT2G23350 29.352 1.60e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04576 - - gmx:100814564 644.81