Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04575 ATGATGCCAAACACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCCGGGGATAGGCGATCTTCGGATGCTACTTCTGATCTCTCAATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGTTGCAAGAGACTTTTGCGGGCAGATTTTCGTCTATTAAGGGTGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGCGATGAAAATGAGAGAACGAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGTAGGCCTATGAGAATAGGTGTTGCAACTCCGAAGAAAACTTATGGCTATCAACAACAATATTCTTCTCAAGCTGTCGTATTGGCTGGTGGAGGACACTCGGCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGAGATTCAAACAACACTACTATATTTGTTGGAGGGCTTGATTCTGACATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCCGTGGGGAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGATGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATTCCAATGGAGGCCACTATGGTGGCCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATCTAGCCATGCAACCTGCTGCTGCTGCAATTCAAGGTGCTTCCTGA 807 0.4523 MMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEDAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGYGGHGFAVRQNQDLAMQPAAAAIQGAS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04575 268 SUPERFAMILY RNA-binding domain, RBD 141 246 IPR035979 GO:0003676
Phac3g04575 268 Gene3D - 131 254 IPR012677 -
Phac3g04575 268 FunFam Polyadenylate-binding protein RBP47 132 248 - -
Phac3g04575 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 109 IPR000504 GO:0003723
Phac3g04575 268 Gene3D - 14 123 IPR012677 -
Phac3g04575 268 SMART rrm1_1 31 105 IPR000504 GO:0003723
Phac3g04575 268 SMART rrm1_1 151 218 IPR000504 GO:0003723
Phac3g04575 268 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 226 - -
Phac3g04575 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 222 IPR000504 GO:0003723
Phac3g04575 268 FunFam Polyadenylate-binding protein RBP47B 17 120 - -
Phac3g04575 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 215 IPR000504 GO:0003723
Phac3g04575 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Phac3g04575 268 CDD RRM2_SECp43_like 29 108 - -
Phac3g04575 268 SUPERFAMILY RNA-binding domain, RBD 28 134 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04575 Phac-Chr3 43569331 43574363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04575 21 229 Eukaryotic Initiation Factors Gene Family AT4G34110 29.358 4.76e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04575 - - gmx:100814564 474.167