Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04548 ATGTCTTCCTCCGCCTCCTTCTCCGCCGCCACTCTCACCACCGAGCAAGAACTCTCCGTCATCGTCGCCGCTCTCACCAACGTCGTCGCCGGCTCCACCTCCTCCCTCCCCGACTTCCGCCTCCCCAACGCCTCCCAGCCTCTCGCCGCAACCGCCTTCGACCGGATGGTCCCGCCGCCCACCATGGACACGTGTCGCGAGTGCAAAATCGCCGGCTGCTTGGGCTGCAATTTCTTCCCCGAGGAGAAGAAGAAACAGAAGAGGGCCAAAAAGAAGTACAGAGGCGTCAGACAGAGGCCGTGGGGCAAGTGGGCCGCGGAGATTCGCGACCCACGCCGCGCGGCCCGTGTCTGGCTCGGAACTTTCAACACGGCCGAGGAAGCGGCCCGGGCCTACGACAATGCGGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCAGTAGTGGACGAGTCCTTAAGCATGCAGCAGAGGGAAACAGAGACCGTTGCAGCGGCAGAGCAAGTGAAGAACGAGAATCCCAACCAGGCCATGGAAGTGAACGCGCTTGAATTCGGGAACAACAAAGATACCGAATTCTGGGAAAGGATTGGCGAAGCTGATTTTCATCAGCTGATGATGATGATGGATTTCGCCGCAGATTCTTCCGACTCTGCCACCGGGAACACTCTTAGTTCCTGA 687 0.5983 MSSSASFSAATLTTEQELSVIVAALTNVVAGSTSSLPDFRLPNASQPLAATAFDRMVPPPTMDTCRECKIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAARAYDNAAIEFRGPRAKLNFPVVDESLSMQQRETETVAAAEQVKNENPNQAMEVNALEFGNNKDTEFWERIGEADFHQLMMMMDFAADSSDSATGNTLSS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04548 228 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Phac3g04548 228 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Phac3g04548 228 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Phac3g04548 228 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Phac3g04548 228 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Phac3g04548 228 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Phac3g04548 228 FunFam Ethylene-responsive transcription factor 2 91 150 - -
Phac3g04548 228 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Phac3g04548 228 PANTHER DNA-BINDING DOMAIN 64 172 IPR044808 GO:0003700|GO:0009873
Phac3g04548 228 CDD AP2 93 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04548 Phac-Chr3 43369853 43370921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04548 7 157 AP2-EREBP Transcription Factor Family AT4G34410 47.594 3.72e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac3g04548 AP2 5.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04548 - - gsj:114420690 329.717