Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04475 ATGAAGGGGAGGGTGGTGAGAAAGAGGAGCAAACGATTTTTCTTGCTTTGCTGGTTAGGATTGACTCTGCGGTTGGTTTTCTTACTCGGTGCCTGTTCTGAGAAGACATCATTTAGATTTTTATTTGCGTGCATGCCCTTCATCTCCAGAAGAGTTCTGAGGGAGAGCAACCCCTCGCAGTGGACATCTTCTAATTCTACGGTCATTCTGAATACAAAGAAGCGTCAACAGTTGGTGGTTGACAATGGTATTGTTTCCGTCAAATTTTCAAGACCGGAGGGTTACATCCTTCAAATGTCATATAAAGGAATTAACAATATACTCGCAGATGAAAACGAAGAACAAGATAGAGGGTACCTGGACGTGGTTTGGAATACGCCAGGAAAGTCTAGTAATTTTCAAAGAATCGTCGGGACAAATTTTTCTGTTATAGCAGCTGACGAGAATATGGTTGAGCTTTCATTTTCAAGAACATGGACATCATCCATGAATGGCTCAAGTGTCCCCATGAACATTGACATTAGATACATTTTGCGAAGTGGTGATTCTGGATTTTATTCGTATGCAATATTTGATCGCCCTGAAGGATGGCCTGCGGTGGAGATTGACCAAATTAGGATCGTTTTCAAACTGAAGAAATCCAAGTTCAACTATATGGCAATGGCGGATGATAGGCAAAGAAAGATGCCAACGAAGAGAGATAGAGAAACTGGTCAAGTCTTGGCATACCCTGAAGCAGTTCTATTAACCAGACCAGTCAACCCAGAATTCAGAGGAGAGGTGGATGACAAATACCAGTACTCATGTGAAAACAAGGCTAACACTGTTCATGGATGGGTGAGTGATGATGGCAATGAACCCGTGGGTTTCTGGATGATTACCCCAAGTAACGAGTTCCGCAATGCTGGTCCCATCAAGCAAGACCTTACTTCACATGTTGGCCCCATTACCCTCCAGATGTTTGTGAGCACTCATTATGCTGGGAAGGAGGTAACCATGGCCTTTGAAGAAGGGGAGGCTTATAAAAAGGTTTTCGGCCCTGTGTTCGCCTACGTTAACTCTGCTTCACGCGAGGATGGAACACTATCCCTCTGGTCAGACGCTGTGCAGCAGCAAGCCAAAGAAGTCAGAAATTGGCCTTATGAATTTCCTAAATCAGAAGATTTCGTTCCACCCAGTCAAAGGGGAATAGTTTTGGGAAGATTACTAGTGAAAGATAGTTACTTCAGAGGAGGTAGACTTTTGTATGCTAACAATGCTTACGTTGGTCTAGCATTGCCTGGAGATGCAGGGTCATGGCAAACAGAAAGCAAGGGCTATCAGTTCTGGACTCAAGCTGATACAAAGGGTTTTTTCCTGATTAATAATATTGTTCCCGGTGACTACAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAGATACAATGTTACAATCACCGTCCCAAAGGGAGGAGTGATCACATTGGATTCACTTGTCTATGTTCCACCAAGAAGTGGACCAACCATATGGGAAATTGGGTTCCCAGATCGCACGGCTGCAGAATTCTATGTACCAGACCCTTACCCTACTCTCATGAACAAATTATACAACGAACAGCACAGTGACAAGTTTAGGCAATACGGGTTGTGGGAGCGTTACACTGATTTATATCCAAATGATGATCTTGTTTACACTGTTGGTGTAAGCAATTATAACAAGGATTGGTTTTATGCTCACGTTACAAGAAACGCAGGAAATAAGACATACCAGCCAACGACATGGCAGATTATATTTGAACATCCAGATCAAGTAATAAGAGGAAACTACACATTGCAACTGGCATTGGCATGTACCAATGATGCTGACCTGCAGGTTCGTTTCAATGACCCTGGAGCTGATCCTCCAGACTTTGCAAGTGGGAAAATAGGAGGAGATAGTGCCATAGCAAGGCATGGTTTGCATGGATTGCATAGGTTGTTCAGCATTAGTGTACCAAGTGATCGAATTTTGAAAGGAACAAACACCATCTATCTGAAGCAATCAAGAGCAAGGAATCCTTTTCAAGGAGTAATGAGTTTAAGAGAGTTCAAAAGTTCTGAAGTAAAATTTAATGATCCTGAAGTTAAACTGCATATAGAAAACAAGCAGATCATAGTGCAGAATGGCATTGTTCGTGTAACTTTCTCAAATCCGGAGGGCATTATCCTTGGAATTTCATACAATGGAATAAACAATGTGCTTGAAGGTCGCAACAAATTTAATAACAGAGGGTATTTTGACATTGTCTGGAATGCACCAGGAACCCGTTCAAAACTTTTGGGAATTGAAGGGAGTAGATTTTCAGTTATAGAGGCAAATGGGAATGAAGTAGAACTTTCTTTTTCCAGGACGTGGAACAAGGACAGATCAACTCTCCCTTTAAACATAGACAAAAGATATATTTTACGAAGAGGTAGTTCAGGATTATACATATATGGTATATTTGAGCATCCTGAAGATTTTCCTGCAACGGAGATTGATCACATTAGGATTGTTTTCAAGCTGCAAAGGGACAGGTTCCACTACATGGCTATAGCAGATGATAGGCAGCGACTCATGCCAACAGCAGAAGATAGATCTACAGGGCAACCCCTTGATTATCCTGAAGCTGTTCTAATCACCAATCCCAGTAACCCTGAACTTCAAGGAGAGGTTGATGACAAATATCAATACTCTTGTGCGAACAAAGACAATAAAGTTCATGGGTGGATTAACTTGGACTCCAAGACCAATAACTCAGTTGGCTTTTGGATGATCACACCAAGCAATGAGTTTCGTAGTGGTGGTCCAATTAGGCAAGGCCTCACTTCTCATGTTGGCCCTGTCACCCTTAATATACTTCATACCACTCACTACGCTGGGAAGGAAGTGACCATGAGATTACACGAAGGGGAACCCTTCAAGAAAGTTTATGGTCCCGTTTTTGCTTATCTCAATTCAGTTTCTGGAGTTCATGGCTCAGAGAAAGTCCTCTGGAGTGATGCTGTACTACAGCTATCAGAGGAAATCAATAGATGGCCTTATGATTTTCCTAAATCAGAGGATTTTGTCCCAGCCAATAAACGGGGAAGAGTGGAAGGACGATTACTTGTTCAGGACAGACACATTAAAGGAGGGAAATTTGTATATGGCCACAATGCTTATATTGGTTTGGCTCTGCCCGGAGATGTGGGATCATGGGAAAGACAAAGCAAGGGTTACCAATTCTGGTCTCGAGCTGATAAAGTTGGCAACTTCACAATTGAAAATATTGTACCAGGGGACTACAATTTATATGCATGGATTCCTGGTATTTTTGGAGACTATAAATATAGCTCTACCATAACCATAACACCAGGATGCATTATCCAATTAGGTTCCCTCATATACAATCCTCCAAGAAATGGACCAACCGTGTGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCCACGTTCCAAATCCTTATCCTAACCTCATAAACCGATTATACATTGGGAAACCATTACACAATTTCAGACAATATGGATTATGGAACCGCTACAATGAGTTATATCCAAATGAGGACCTCACTTACAATGTTGATGTGAATGATTATAGCAGAGATTGGTTTTATGCTCAGGTTCCCAGGAAAATAGGAAACAACACATTTCAGCCAACAGCATGGGAGATTAAATTCCATCTCCCATTTGTTATGAGAGGCAACTACACATTGCGACTGGCCTTGGCCTCAGCTACACGTTCTAACCTGGTGGTTAGGTTCAATAACCCTGTGGCTCGTCCTCCACACTTTTCTACTGGATCAATAGGTCAAGATAATGCTGTAGCAAGACATGGCATCCATGGATTGTATTGGCCTTACAGTGTTGAAGTAAGAAGCAATGTATTAGTGGAAGGAGTGAACACCATCTATCTGAGGCAACCAAAAGTTACAAGTCCTTTCCAAGCCATTATGTATGATTACATCCGTTTGGAAAGACCTGAAGCATAG 4002 0.421 MKGRVVRKRSKRFFLLCWLGLTLRLVFLLGACSEKTSFRFLFACMPFISRRVLRESNPSQWTSSNSTVILNTKKRQQLVVDNGIVSVKFSRPEGYILQMSYKGINNILADENEEQDRGYLDVVWNTPGKSSNFQRIVGTNFSVIAADENMVELSFSRTWTSSMNGSSVPMNIDIRYILRSGDSGFYSYAIFDRPEGWPAVEIDQIRIVFKLKKSKFNYMAMADDRQRKMPTKRDRETGQVLAYPEAVLLTRPVNPEFRGEVDDKYQYSCENKANTVHGWVSDDGNEPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLQMFVSTHYAGKEVTMAFEEGEAYKKVFGPVFAYVNSASREDGTLSLWSDAVQQQAKEVRNWPYEFPKSEDFVPPSQRGIVLGRLLVKDSYFRGGRLLYANNAYVGLALPGDAGSWQTESKGYQFWTQADTKGFFLINNIVPGDYNLYAWVPGFIGDYRYNVTITVPKGGVITLDSLVYVPPRSGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNEQHSDKFRQYGLWERYTDLYPNDDLVYTVGVSNYNKDWFYAHVTRNAGNKTYQPTTWQIIFEHPDQVIRGNYTLQLALACTNDADLQVRFNDPGADPPDFASGKIGGDSAIARHGLHGLHRLFSISVPSDRILKGTNTIYLKQSRARNPFQGVMSLREFKSSEVKFNDPEVKLHIENKQIIVQNGIVRVTFSNPEGIILGISYNGINNVLEGRNKFNNRGYFDIVWNAPGTRSKLLGIEGSRFSVIEANGNEVELSFSRTWNKDRSTLPLNIDKRYILRRGSSGLYIYGIFEHPEDFPATEIDHIRIVFKLQRDRFHYMAIADDRQRLMPTAEDRSTGQPLDYPEAVLITNPSNPELQGEVDDKYQYSCANKDNKVHGWINLDSKTNNSVGFWMITPSNEFRSGGPIRQGLTSHVGPVTLNILHTTHYAGKEVTMRLHEGEPFKKVYGPVFAYLNSVSGVHGSEKVLWSDAVLQLSEEINRWPYDFPKSEDFVPANKRGRVEGRLLVQDRHIKGGKFVYGHNAYIGLALPGDVGSWERQSKGYQFWSRADKVGNFTIENIVPGDYNLYAWIPGIFGDYKYSSTITITPGCIIQLGSLIYNPPRNGPTVWEIGIPDRSAAEFHVPNPYPNLINRLYIGKPLHNFRQYGLWNRYNELYPNEDLTYNVDVNDYSRDWFYAQVPRKIGNNTFQPTAWEIKFHLPFVMRGNYTLRLALASATRSNLVVRFNNPVARPPHFSTGSIGQDNAVARHGIHGLYWPYSVEVRSNVLVEGVNTIYLRQPKVTSPFQAIMYDYIRLERPEA* 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04475 1333 CDD RGL4_M 394 494 IPR029413 -
Phac3g04475 1333 CDD RGL4_N 704 991 - -
Phac3g04475 1333 Pfam Polysaccharide lyase family 4, domain II 1055 1126 IPR029413 -
Phac3g04475 1333 Pfam Polysaccharide lyase family 4, domain II 418 490 IPR029413 -
Phac3g04475 1333 SUPERFAMILY Galactose mutarotase-like 72 357 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phac3g04475 1333 CDD RGL4_C 506 687 - -
Phac3g04475 1333 FunFam Rhamnogalacturonate lyase B 391 491 - -
Phac3g04475 1333 Pfam Rhamnogalacturonate lyase family 699 894 IPR010325 -
Phac3g04475 1333 Pfam Rhamnogalacturonate lyase family 66 261 IPR010325 -
Phac3g04475 1333 CDD RGL4_M 1030 1130 IPR029413 -
Phac3g04475 1333 SUPERFAMILY Galactose-binding domain-like 1137 1329 IPR008979 -
Phac3g04475 1333 Gene3D - 390 493 - -
Phac3g04475 1333 Gene3D - 1026 1126 - -
Phac3g04475 1333 CDD RGL4_C 1142 1329 - -
Phac3g04475 1333 Gene3D - 705 977 IPR014718 GO:0030246
Phac3g04475 1333 Gene3D - 61 364 IPR014718 GO:0030246
Phac3g04475 1333 Gene3D - 501 684 - -
Phac3g04475 1333 Gene3D - 1138 1329 - -
Phac3g04475 1333 FunFam Rhamnogalacturonate lyase B 1027 1127 - -
Phac3g04475 1333 SUPERFAMILY Galactose mutarotase-like 719 991 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phac3g04475 1333 CDD RGL4_N 77 356 - -
Phac3g04475 1333 SUPERFAMILY Galactose-binding domain-like 501 687 IPR008979 -
Phac3g04475 1333 SUPERFAMILY Starch-binding domain-like 1026 1127 IPR013784 GO:0030246
Phac3g04475 1333 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 71 687 - -
Phac3g04475 1333 Pfam Polysaccharide lyase family 4, domain III 504 687 IPR029411 -
Phac3g04475 1333 Pfam Polysaccharide lyase family 4, domain III 1140 1328 IPR029411 -
Phac3g04475 1333 SUPERFAMILY Starch-binding domain-like 390 494 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04475 Phac-Chr3 42819413 42832151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04475 64 687 Polysaccharide Lyase AT1G09910 53.355 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04475 K18195 - gmx:100776664 1157.51