Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04465 ATGGAGCTTTCTCAGCTTGGTTTCCTTGATGAATTGGTAGCTCCAAGAAGAGATACATGGAATGCTTTCTCCACTGGCTTCTTGGACCTCTTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGAGAACCCATCTTTGGCCACCTCAAACTCTCTATTTGGTGCATTTTCAGCACCATTAGACCGCAGATCTGAATGCCCTTACATCAATGAAGTGCCACCATACCCATTTGCAGATGCCTTTGCAATGCCATTGCCAGAGCTTCACCCTGGGAACGATGATCCCCCACCTCCACTCCCACCCACAGGGGAGGATCAAGAGATTGCCTTTCAAGACAACAACAACAACAAGAACTTTGAAGAAACCAAGGGTGTCTGCAAAGTTGAGGAACAAGGCTCAGAGATTCCACTCTTCAACATAGGCATGTCTGATGATGGAGAGAGAAAACCCAAGACCAAAAAGCTAGAGGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAAATCAGCAAGATGGACAGAACCTCTATTCTTGGGGATACTATAGACTATATGAAAGAGCTTTTGGAAAGGATTGGTAAGTTGCAGGAGGAAGAGGGCACAAGTCAGATTAATCTGTTGGGCATTTCAAAGGAACAACTCAAGCCAAATGAAGCAATGGTAAGAAACTCCCCCAAGTTTGATGTTGAAAGGAGAGACCAAGACACTAGGATCAGCATTTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACATTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAATGGAAGCCTCTTGTTCTGAGGTAGGTGATCAGAGAAATTGCATTGGCCCCGAGGAGATAAAACAATCACTATTCAGAAATGCAGGGTTTGTTGGGAAATGTCTCTAG 987 0.4468 MELSQLGFLDELVAPRRDTWNAFSTGFLDLLSNGWSFDTFLENPSLATSNSLFGAFSAPLDRRSECPYINEVPPYPFADAFAMPLPELHPGNDDPPPPLPPTGEDQEIAFQDNNNNKNFEETKGVCKVEEQGSEIPLFNIGMSDDGERKPKTKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEGTSQINLLGISKEQLKPNEAMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVVSSFNDFSMEASCSEVGDQRNCIGPEEIKQSLFRNAGFVGKCL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04465 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Phac3g04465 328 SMART finulus 163 212 IPR011598 GO:0046983
Phac3g04465 328 MobiDBLite consensus disorder prediction 144 159 - -
Phac3g04465 328 Gene3D - 165 238 IPR036638 GO:0046983
Phac3g04465 328 MobiDBLite consensus disorder prediction 138 159 - -
Phac3g04465 328 MobiDBLite consensus disorder prediction 89 103 - -
Phac3g04465 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 221 IPR036638 GO:0046983
Phac3g04465 328 MobiDBLite consensus disorder prediction 84 109 - -
Phac3g04465 328 Pfam Helix-loop-helix DNA-binding domain 163 206 IPR011598 GO:0046983
Phac3g04465 328 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 118 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04465 Phac-Chr3 42754308 42756990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04465 9 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 46.765 9.87e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g04465 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04465 - - gmx:100790319 486.878