Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04429 ATGGATTACGCTCGAGACGGGAACGTGGTGCAGATAATCACAGGCGGTGGCGGAGGAGGAGAGAGCTGGTCGGGCGATCAAGCCGATTGGGCGACGGAGGATGAGTACCGGTTTTGGAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAGTCGCGGTCGGAGCCGCCGAGCAAAAAGTCCCGGAATTCGCAGGATGGGAGCTCGAACCGGTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAGCTGTGCTGCAAGTTCAGGGCAGGGACCTGCCCTTACATCACCAACTGCAATTTTGCCCACAGCATTGAGGAGCTGCGCCGCCCGCCACCGAACTGGCAGGAGATTGTGGCGGCACACGAGGAGGAGAAGGCGGTGATGGCAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTCGCGGGGGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGCCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAGCAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGACCAGGGGGTTATGCCGGTGGTGGTGGAGGTGGTAGCGGCGGTGGTAGTGGTGGGGGCGGTGGTAGTGGAAATGGTGGTGGTGGTAGTGGTGTTGCTAATGCTGCTGGGAATGGGGCTAATTCCAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTCATGGAAGGAGAAAGCAGAGATGGTGGTTCTGTGGTTGGCAGTGACACAAGCAAGGGAGCAGCTTCAAAAGCTTCTGCTGATAACGTGGTTGCTGCAGTTACTCCAGTTGCACATTCTGATGTGTATCACATTGGAGTCCCTTCACAAAGGGCTTCTTCCATTGTGATTCAGAGGCCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATGA 1104 0.529 MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRFWNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGSGGGSGGGGGSGNGGGGSGVANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGGSVVGSDTSKGAASKASADNVVAAVTPVAHSDVYHIGVPSQRASSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04429 367 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Phac3g04429 367 FunFam zinc finger CCCH domain-containing protein 15-like 239 278 - -
Phac3g04429 367 Pfam CCCH-type zinc finger 164 186 IPR041367 -
Phac3g04429 367 FunFam Zinc finger CCCH domain-containing protein 81 117 - -
Phac3g04429 367 Gene3D - 80 116 - -
Phac3g04429 367 Gene3D - 239 277 - -
Phac3g04429 367 FunFam Zinc finger, CCCH-type 154 192 - -
Phac3g04429 367 ProSiteProfiles Zinc finger C3H1-type profile. 160 188 IPR000571 GO:0046872
Phac3g04429 367 MobiDBLite consensus disorder prediction 1 78 - -
Phac3g04429 367 MobiDBLite consensus disorder prediction 36 60 - -
Phac3g04429 367 SUPERFAMILY CCCH zinc finger 243 276 IPR036855 GO:0046872
Phac3g04429 367 SUPERFAMILY CCCH zinc finger 83 116 IPR036855 GO:0046872
Phac3g04429 367 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Phac3g04429 367 SMART c3hfinal6 160 187 IPR000571 GO:0046872
Phac3g04429 367 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Phac3g04429 367 SUPERFAMILY CCCH zinc finger 159 188 IPR036855 GO:0046872
Phac3g04429 367 Gene3D - 153 200 - -
Phac3g04429 367 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
Phac3g04429 367 PANTHER CCCH ZINC FINGER/TIS11-RELATED 234 277 IPR045877 GO:0003729
Phac3g04429 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 246 271 IPR000571 GO:0046872
Phac3g04429 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04429 Phac-Chr3 42526532 42531072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04429 247 275 C3H Transcription Factor Family AT1G68200 62.069 3.32e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac3g04429 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04429 - - gmx:100788208 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g04429 3 42526532 42531072 Phac3g04429 3 42526532 42531072 ECH