LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g04420	ATGGAGGGAGCGGGCAGTGGCGGCGGAGAAGTGTCGACGGCGGCGCCGACACCGATTCCGAACGCGAACGCGCCGCCGCCTTTCCTGAGCAAGACGTACGACATGGTGGACGACCCTTCGACGGACTCGATTGTGTCGTGGAGTCCGACGAACAACAGCTTCATTGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTTTTGCCCAAACACTTCAAGCACAATAACTTCTCCAGTTTCGTTCGCCAGTTAAACACCTACGGTTTTAGGAAGGTAGACCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACCTGCTTAAGACTATATCCCGGCGGAAACCTGCCCACGGTCATAGTCATCAACAAGCACAACAAGTACATGGACAGAGTTCATCCGTTGGGGCTTGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAATCTACTGATAACCAGCTGCAGACTATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGGTTCTTAGCTCAATTTGTACAACAGCAAAATGAGAGTAATAGACGCATAACAGAGGCAAACAAAAAACGTCGACTGAAGCAGGAAGGTATTGGTGAGATGGAACATACGGCTACTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGGTAAGGCAAATAATGAAATTGGATGCTTCTCGACTAGAATCTTTCAGTAATAACCCCGATAATTACTTGATTGGTGATCATTCATCACCATCCAGTGAAATGGACAGGGGAAACTCTTTGACTCGATCTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTAAAGTGATGTCTTCTCATGTTCCATCTGCAACAAGTACTCAAGGGCAAGGTCCTTCAATATCTTCTCCTACTCAAACAGATGAAATCATGCCAGACCTTTCTACAATACCAGATATAGTGGCAGGAAATATTCTTGACATTCCTCAAGAAAATTATATGGCACCAGAGACGGGTGGTGACGGATATATGGATCCTGCTTCATTTGGAATAAATATGTCACTGCCCCTTGATTTTAATAGTATTTCACCTGAACCAGACATCGATGATTTGTTGAACAATCCTAACTTTTGGGATGATATTGTGCGAACTCCGGTGTCAGAGGATATTGAAACGAATGGTGGTGAAGTATTCGTGGAGAATGAGCTGCAGCCAAGTGAAAATGGATGGGAAAAATCTCAACATATGGACCTGCTTACTGAGCAGATGGGCCTACTTTCTTCTGATGTAGAGAAAAGTTGA	1422	0.4536	MEGAGSGGGEVSTAAPTPIPNANAPPPFLSKTYDMVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHSHQQAQQVHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKQEGIGEMEHTATSDGQIVKYQPLINEAAKAMVRQIMKLDASRLESFSNNPDNYLIGDHSSPSSEMDRGNSLTRSSGVTLQEVPPTKVMSSHVPSATSTQGQGPSISSPTQTDEIMPDLSTIPDIVAGNILDIPQENYMAPETGGDGYMDPASFGINMSLPLDFNSISPEPDIDDLLNNPNFWDDIVRTPVSEDIETNGGEVFVENELQPSENGWEKSQHMDLLTEQMGLLSSDVEKS*	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g04420	473	MobiDBLite	consensus disorder prediction	282	351	-	-
	Phac3g04420	473	MobiDBLite	consensus disorder prediction	1	26	-	-
	Phac3g04420	473	FunFam	Heat shock transcription factor 1	21	118	-	-
	Phac3g04420	473	SMART	hsfneu3	24	117	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g04420	473	PRINTS	Heat shock factor (HSF) domain signature	79	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g04420	473	PRINTS	Heat shock factor (HSF) domain signature	28	51	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g04420	473	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g04420	473	Coils	Coil	146	173	-	-
	Phac3g04420	473	ProSitePatterns	HSF-type DNA-binding domain signature.	67	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g04420	473	Pfam	HSF-type DNA-binding	28	117	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g04420	473	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	22	306	IPR027725	-
	Phac3g04420	473	Gene3D	-	21	118	IPR036388	-
	Phac3g04420	473	SUPERFAMILY	"Winged helix" DNA-binding domain	23	117	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g04420	Phac-Chr3	42445259	42449371	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g04420	7	467	HSF	AT1G32330	56.632	3.94e-171	488

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Phac3g04420		HSF_DNA-bind	6.6e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g04420	K09419		-	gmx:732544	758.444