Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04417 ATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACGGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGCGAAAAGCAAATGGAATTTGAAGAAATTTTCATGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCGGCATTGGATTTTGAAAGGGTGGTGAGACAACACGTCTATACTAATGATATTTTGTCAACTGGTGGGGAAGACGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGGGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGTCAAAGATATGCACTTCTTCACAGGGTTCCTTTGCTGCCCCACGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTCTTGATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAAGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACGAGCATCCAGTATGCCTTCGCCATGAATCTCTTGACTTCACCTGTGGGACCAAACGCACACTTTATCTTAGGGAAGATACTTCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAAAGAGATACTTAAGCAAATGAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCTGAGGCTAATGGATATACACCTTATTGTGAGATGAAATTTGATTCTGTAACTAATTTTTGTACCACCACAAAGCTGTCAACAAATAATCAAGAGCGTATACGAAGTCAATTTGTTTCTAGACCTGAAGTATCTTCTGCTGCATCTACGCTATGTTCTCTTTCCAAACCTCCTATCGATGAGGTGCATGCTAACTTTAAATTAGGCAGTCCTGATTCTGAAGAGAAATGTGGAATATCCAATAATGCTTCAGACTCTTTTCAATCCCCTGCTCAGTATGAATGCCCTAATAAATCTATGGGCAATGTGCATAGATTGGAGAAGAAGAAGCTCATTGTGGATAACAAGAGTGATGATTCAGATTCAGGTTTTTTTTGGGTTAAGCGCCGTTCTTCTCTTAAGGCGGAGAGGAGAAATATAAGCGGTGCTACGTTTTCAACAAATTCTGTACAGCAGGAACTCAAACAGTTGAAGAAAGAGCTTCGCCATGGAAGGAGTGTGCCAGCAGTAGATATGAGCAAAAGAAAGGAAACGAGTTACAAATATAGTGGCGGTGTTAGTGGTAAGGTTAATGGTGAAATATCCTCGAGGGACAAATTTGCAAGGGGAAATAACATTCACGTATCCGTAAGATATAAGAAGGGAAGTAATGAGGAAGTTAGTAGACGACGACATCATTGCCACACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCTTTAAAGCTCGAGAGCAGATTGAATTGAACTAA 1938 0.4097 MANKSFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLAKSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALDFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRVPLLPHEELLCKEAMLLYATLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHEHPVCLRHESLDFTCGTKRTLYLREDTSDMEAAAKRFEQEDGILKEILKQMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSVTNFCTTTKLSTNNQERIRSQFVSRPEVSSAASTLCSLSKPPIDEVHANFKLGSPDSEEKCGISNNASDSFQSPAQYECPNKSMGNVHRLEKKKLIVDNKSDDSDSGFFWVKRRSSLKAERRNISGATFSTNSVQQELKQLKKELRHGRSVPAVDMSKRKETSYKYSGGVSGKVNGEISSRDKFARGNNIHVSVRYKKGSNEEVSRRRHHCHTDRLLHSIEVAPKRFKAREQIELN* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04417 645 Gene3D Cupin 1 266 - -
Phac3g04417 645 ProSiteProfiles JmjC domain profile. 58 228 IPR003347 -
Phac3g04417 645 Pfam C5HC2 zinc finger 308 357 IPR004198 -
Phac3g04417 645 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 561 - -
Phac3g04417 645 Pfam JmjC domain, hydroxylase 88 211 IPR003347 -
Phac3g04417 645 SUPERFAMILY Clavaminate synthase-like 48 244 - -
Phac3g04417 645 SMART cupin_9 58 228 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04417 Phac-Chr3 42422284 42435309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04417 55 242 C2H2 Transcription Factor Family AT5G04240 48.404 2.47e-56 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phac3g04417 JmjC 4.3e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04417 - - vra:106765852 1120.92