Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04416 ATGGAAGCTAGAAATGGGTTAGAATATTTGAAACATAAAAGGCTTCAGCGAGCAAAATCTGCTACTGCCAGTGCCACTGCAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGAGGTTCTGCATCATATGGTATGAGCTTGCACGCTGATGCAGGTAGTTTTTCCCAGCGGAAGGTGGATAAGTTTGACACAAGTGATCTGGCATGGACTGAGAAAATTCCAGAGTGTCCTGTATATTATCCAACAAAGGAGGAATTTGATGATCCCTTGCTTTATTTACAAAGAATAGCTCCCGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAGGGAACAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAAATTATACATTTCGTGATTTTGAAAAGATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACGGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGCGAAAAGCAAATGGAATTTGAAGAAATTTTCATGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCGGCATTGGATTTTGAAAGGGTGGTGAGACAACACGTCTATACTAATGATATTTTGTCAACTGGTGGGGAAGACGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGGGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGTCAAAGATATGCACTTCTTCACAGGGTTCCTTTGCTGCCCCACGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTCTTGATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAAGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACGAGCATCCAGTATGCCTTCGCCATGAATCTCTTGACTTCACCTGTGGGACCAAACGCACACTTTATCTTAGGGAAGATACTTCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAAAGAGATACTTAAGCAAATGAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCTGAGGCTAATGGATATACACCTTATTGTGAGATGAAATTTGATTCTGTAACTAATTTTTGTACCACCACAAAGCTGTCAACAAATAATCAAGAGCGTATACGAAGTCAATTTGTTTCTAGACCTGAAGTATCTTCTGCTGCATCTACGCTATGTTCTCTTTCCAAACCTCCTATCGATGAGGTGCATGCTAACTTTAAATTAGGCAGTCCTGATTCTGAAGAGAAATGTGGAATATCCAATAATGCTTCAGACTCTTTTCAATCCCCTGCTCAGTATGAATGCCCTAATAAATCTATGGGCAATGTGCATAGATTGGAGAAGAAGAAGCTCATTGTGGATAACAAGAGTGATGATTCAGATTCAGGTTTTTTTTGGGTTAAGCGCCGTTCTTCTCTTAAGGCGGAGAGGAGAAATATAAGCGGTGCTACGTTTTCAACAAATTCTGTACAGCAGGAACTCAAACAGTTGAAGAAAGAGCTTCGCCATGGAAGGAGTGTGCCAGCAGTAGATATGAGCAAAAGAAAGGAAACGAGTTACAAATATAGTGGCGGTGTTAGTGGTAAGGTTAATGGTGAAATATCCTCGAGGGACAAATTTGCAAGGGGAAATAACATTCACGTATCCGTAAGATATAAGAAGGGAAGTAATGAGGAAGTTAGTAGACGACGACATCATTGCCACACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCTTTAAAGCTCGAGAGCAGATTGAATTGAACTAA 2448 0.4101 MEARNGLEYLKHKRLQRAKSATASATATNIANMMNRSGGDALRGSASYGMSLHADAGSFSQRKVDKFDTSDLAWTEKIPECPVYYPTKEEFDDPLLYLQRIAPEASKYGICKIISPLSASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGINYTFRDFEKMANKSFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLAKSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALDFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRVPLLPHEELLCKEAMLLYATLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHEHPVCLRHESLDFTCGTKRTLYLREDTSDMEAAAKRFEQEDGILKEILKQMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSVTNFCTTTKLSTNNQERIRSQFVSRPEVSSAASTLCSLSKPPIDEVHANFKLGSPDSEEKCGISNNASDSFQSPAQYECPNKSMGNVHRLEKKKLIVDNKSDDSDSGFFWVKRRSSLKAERRNISGATFSTNSVQQELKQLKKELRHGRSVPAVDMSKRKETSYKYSGGVSGKVNGEISSRDKFARGNNIHVSVRYKKGSNEEVSRRRHHCHTDRLLHSIEVAPKRFKAREQIELN* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04416 815 FunFam Lysine-specific demethylase isoform A 76 425 - -
Phac3g04416 815 SMART JmjN_1 80 121 IPR003349 -
Phac3g04416 815 Pfam JmjC domain, hydroxylase 258 381 IPR003347 -
Phac3g04416 815 Pfam C5HC2 zinc finger 478 527 IPR004198 -
Phac3g04416 815 Gene3D Cupin 74 403 - -
Phac3g04416 815 ProSiteProfiles JmjN domain profile. 81 122 IPR003349 -
Phac3g04416 815 ProSiteProfiles JmjC domain profile. 228 398 IPR003347 -
Phac3g04416 815 Pfam jmjN domain 82 114 IPR003349 -
Phac3g04416 815 PANTHER LYSINE-SPECIFIC DEMETHYLASE 73 729 - -
Phac3g04416 815 SMART cupin_9 228 398 IPR003347 -
Phac3g04416 815 SUPERFAMILY Clavaminate synthase-like 159 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04416 Phac-Chr3 42421650 42435309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04416 78 546 JUMONJI Transcription Factor Family AT2G34880 31.860 8.37e-66 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phac3g04416 JmjC 6.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04416 - - vra:106765852 1424.07