Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04414 ATGGACAATGAATCTAATCCCACAGTCCATGTTGGTACTGCTGCATTTTCACTTCCCCCTAAAGGCAGGAGTGACGACAGGGATGAACAAGAGAAGCAAGGAAGTCCAAAAAGGCAGAAGAGAGATGAGGTTGCTGAGGAGTTCAAGAATGAGTTTCAGGAGAATATCAATATCGATGAGGGTGATAACTCTGAAGAAAGATATGAAGAAACACAAGAGAAAAAGATGGAAGTTTTGCCTGTGAAAAGTACAGAGAACAGTGAGGAAGAAATTGAGGAAAACGCCTCTAAAACTGGTCAAGTAAATCCTGAAATGCTAGCTACTCTGAAGGAACGAAATGCTGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGAGCTGATCTGGAAAATCTTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTACATACGGATTATGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCAACAGAAGAAGCAGTGCTAAAAGCACTTAAGTTAAATAATACAGAATTGTTGAGATGTCGCATGAGAGTTGGTGTAGCTCCAGCAAGGCGTAAATGTACCCCCAATAGAAGTTTCCATGTTAATTATTTTAGCAACAAATATCAAGGTAGTGAAAGAATTCAGCCGGTGAGATGTTCAATGATTTCAAAGGATTGTGAACAAGAAACTGAGGAAAAAGACTCCAAAGCTGTTCAGAAAATTCCCAAAGTGCTAGATACTTGGAAACAACAAAATGCTACATCGAAGACAATATGTGCTAGAAATTTGTCTTACAGTGTGGAGAGCGATGATATGGAAATACTTTTCAAAGAGTGTGGAGAAATTGTTGATATCCGTCTTCAAACAGATCATGAAGGGAGGTCTAGAGGTTTTGGGTATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAAGCTCTTGAGTTGGATAATACAAAATGGTTTGGACGATGCATTAGTGTTGGTTTAGCTCAAGAAAAGGGTGAATATGCTTCCAATAGAAGTTTTAGCAACTGGAGCAATTCATTCAATAAGCGCGAAAGAATCGAGCCCTTCAAAAGGACCGGGAGTTCAGAGTACTGTGAGGAAGATACCGAGGGAAAAGTCTTAAAAGATCCTTGGAAAAGTTCTAGCTGGTTGGCTACTATGAAAGAAGAAAATGCTTCATCAAAGACAATATATGTCAAAAACTTGTCATACAGAGTGGAACAGGCTGATGTGGAATTTTTTTTCAAAGAGTGTGGAGAAATCATTGATGTTCGGCTACATAGAGATAATGAGGGGAGGTTAAAAGGCTTCGGACATATTGAGTTTGCAACAGCAGAAGCTGCACTAAAAGCTCTTGAGTTGGATAATACAGAGTTGTTGAGGCGTTGCATTGGAGTTGAAATAGCTCGAGGAAAGGGTGAACATACCTGGAATAGAAGCAACTCTTTCCAAAAGCATGAAAGATTTCAGCCCATGAAGGCTACAGAGTATTCAGAGGACTGTGAGGAAGAAATTGAGAAAAAAGCCCACGAAAGTCCTCATGAAAGTCCTAAAACGCTACCTACTTTGAAAGACCAAAATGCTTCATCAAATACGATATATGTTGGAAACTTGTCATGTGGAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGTATTGTGTATGTTCATCCACATACAGATCATGAAGGGAGGCCTAAAGGCTTTTTACATGTTGAGTTTTCAACGGCTGAAGCAGCACAAAAGGCTCTTGTGTTGGATCATACAGAATTGTTTGGACGTCCCATCAGAGTTGAATTAGCTCGAGAAAAAAGTTATAGCTACAGTAAAAGCCACTGGAGCAACTCATTCCAATCTCTAGCAGCATATGTCAAGGGTTTTGATTGTTCCCTCATGGAAGAAGAGATAAAAGCAAACCTGGAAGAGCATTTTGGTTCTTGTGGAGAGATTACGAGGATATCAATTCCAAAATTTTATGATTCTGGTGAATTTAAGGGGTTTGCTGTCCTAGATTTCAAGGATCATGACAGTGTGAAGAGAGCTCTAGAACTGGATCAAACTGAGATTGGAGGTTATACCTTGTTAGTTGAAAAAGCAAGAGCTCGACGTGATAACCAGAGTGTAGATGGCATTAGAGGTGGTGGACGGGATGGAAATGGCTCTAACAAAGGAGTTGGTTGGGGAGAAAGTGGTGGATGGCATTCTGGTGAGTGA 2244 0.3993 MDNESNPTVHVGTAAFSLPPKGRSDDRDEQEKQGSPKRQKRDEVAEEFKNEFQENINIDEGDNSEERYEETQEKKMEVLPVKSTENSEEEIEENASKTGQVNPEMLATLKERNAGSKTIYTKNLSYSVERADLENLFKDCGEIVDIRLHTDYEGRFRGFGHVEFATEEAVLKALKLNNTELLRCRMRVGVAPARRKCTPNRSFHVNYFSNKYQGSERIQPVRCSMISKDCEQETEEKDSKAVQKIPKVLDTWKQQNATSKTICARNLSYSVESDDMEILFKECGEIVDIRLQTDHEGRSRGFGYVQFATTEAAQKALELDNTKWFGRCISVGLAQEKGEYASNRSFSNWSNSFNKRERIEPFKRTGSSEYCEEDTEGKVLKDPWKSSSWLATMKEENASSKTIYVKNLSYRVEQADVEFFFKECGEIIDVRLHRDNEGRLKGFGHIEFATAEAALKALELDNTELLRRCIGVEIARGKGEHTWNRSNSFQKHERFQPMKATEYSEDCEEEIEKKAHESPHESPKTLPTLKDQNASSNTIYVGNLSCGVEQADVENLFKECGGIVYVHPHTDHEGRPKGFLHVEFSTAEAAQKALVLDHTELFGRPIRVELAREKSYSYSKSHWSNSFQSLAAYVKGFDCSLMEEEIKANLEEHFGSCGEITRISIPKFYDSGEFKGFAVLDFKDHDSVKRALELDQTEIGGYTLLVEKARARRDNQSVDGIRGGGRDGNGSNKGVGWGESGGWHSGE* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04414 747 Gene3D - 50 190 IPR012677 -
Phac3g04414 747 MobiDBLite consensus disorder prediction 512 531 - -
Phac3g04414 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 630 711 IPR000504 GO:0003723
Phac3g04414 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 193 IPR000504 GO:0003723
Phac3g04414 747 SUPERFAMILY RNA-binding domain, RBD 394 489 IPR035979 GO:0003676
Phac3g04414 747 SUPERFAMILY RNA-binding domain, RBD 253 350 IPR035979 GO:0003676
Phac3g04414 747 Gene3D - 345 484 IPR012677 -
Phac3g04414 747 Gene3D - 485 623 IPR012677 -
Phac3g04414 747 Gene3D - 222 344 IPR012677 -
Phac3g04414 747 Gene3D - 628 744 IPR012677 -
Phac3g04414 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 401 477 IPR000504 GO:0003723
Phac3g04414 747 MobiDBLite consensus disorder prediction 21 95 - -
Phac3g04414 747 SUPERFAMILY RNA-binding domain, RBD 110 211 IPR035979 GO:0003676
Phac3g04414 747 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 383 492 - -
Phac3g04414 747 SUPERFAMILY RNA-binding domain, RBD 530 617 IPR035979 GO:0003676
Phac3g04414 747 MobiDBLite consensus disorder prediction 1 97 - -
Phac3g04414 747 SUPERFAMILY RNA-binding domain, RBD 633 741 IPR035979 GO:0003676
Phac3g04414 747 Coils Coil 448 468 - -
Phac3g04414 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 537 613 IPR000504 GO:0003723
Phac3g04414 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 329 IPR000504 GO:0003723
Phac3g04414 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Phac3g04414 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 648 704 IPR000504 GO:0003723
Phac3g04414 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 403 470 IPR000504 GO:0003723
Phac3g04414 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 539 607 IPR000504 GO:0003723
Phac3g04414 747 SMART rrm1_1 261 332 IPR000504 GO:0003723
Phac3g04414 747 SMART rrm1_1 538 609 IPR000504 GO:0003723
Phac3g04414 747 SMART rrm1_1 402 473 IPR000504 GO:0003723
Phac3g04414 747 SMART rrm1_1 631 707 IPR000504 GO:0003723
Phac3g04414 747 SMART rrm1_1 118 189 IPR000504 GO:0003723
Phac3g04414 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 336 IPR000504 GO:0003723
Phac3g04414 747 MobiDBLite consensus disorder prediction 716 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04414 Phac-Chr3 42377318 42403168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04414 403 726 Eukaryotic Initiation Factors Gene Family AT2G36660 22.485 1.50e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04414 - - pvu:PHAVU_003G282900g 1377.46