Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04404 ATGGATTCCTCACTCTCTCTGCACACTCCACCTAACCACAATGCCTTCCAACAACCGCAACCGCCGCTGCAACCGCCGCAACCGCCACAACCGCCACTCTTAGTTCCTAAACCCGAACCCTTCTGGTCCGCCTTAGACCACGACGATATCGGAGACGAACTTGACCTACTCACTGAGTTCAACCGAGTCACCGAGTTGTTCCACCTTGCATTCGGAGGCACCAATGTCGTCATTCCTCCCAACTCCTTCGGACCTCAACCTGCTGCATGCTCCCACCTGCTTCCTTCAGCGGATGTCGATTCGGCAGTCCAGGAAGACCCGAATTCGTCCACCGCCGCCGCGAGCGACGCCTCGCGCGCGATCGTCCCCGTCGCGGACCTCACGGTGAGGGTGGCGCCGAGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTGCGGGTGATGGGTCTGTCGGCGAGGGAGGATGCGGAGCTGCGGGAGACGGTGAGGCGCACGCGCTTGGTGTACGACTCGCTGCGCGTGTATACCGCTGTGGAGGAGGAGAAGCGGGTGGCCGCCTTGGCGGCGACGAAGGCGGCTGCGGTGAAGGAGGAGGAGGGGACAGCGGTGGAGGGCAGGACGCGACGTCTCCGCGGGGACCTGCGAGCTGCTGGACTGATGCGGGAGCGTGGACTGTGGCTGCACCGCCAGCAGCGAATCGTTGGGGCCATTCCTGGGATTGTGGTGGGGGACGTGTTCCTTTTCAGGATGGAGTTGTGTGTGTTTGGGTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTGGAAGTATGAGCTCCTGCGGGGAGCCTATAGCCACCAGTGTGATTGTTTCTGGGGGTTATGAGGATGATTTGGATAATGGTGAGGTTATAATCTACACTGGTCAGGGAGGGCAGGAGAAGAATTCGTCTAGGCAGATTGCTGATCAGAAGTTGGAGTCAGGGAACCTTGCATTGGAGAGGAGTATGCATTATGGTGTTGAGGTGAGGGTTATTCGTGGGATGAGGTATGAGGGGAGTGCTTCTGCTTCTGGCAAGGTGTATGTGTATGATGGAGTGTATAAGATTGTTGATCGCTGGTTTGATGTGGGGAGGTCTGGTTTTGGAGTTTACAAGTTTAAGCTTTGGAGAATTGAGGGGCAGCCTAAGATGGGAAGTGCTATTTTGAAGGAAGCTAGGAGTATTAGGAGGAGTGAGTCGGATTCTAACTCTTTGCATTGTCTTTCTGCCGATATGTCCAACAAGAAGGAGAAGGTTGCTGTTCGGCTTTTTAACGACATTGATGATTATCGGGATCCTCTTAGCTATGAGTATCTTCCCAGGACTAGTTTTCCACAGTTTGTGTTTCATCAGAGTGGCCAAGCTACTGGTTGTAACTGTGTGGATGGTTGTGGGGATGGATGCTTTTGTGCTATGAAAAATGGGGGCGATTTTCCTTATACTCTTCAGGGGCATCTTGTGAAAGGGAAGCCTTTGATTTTTGAGTGTGGCCCTTTTTGTTCTTGTCCTCCTCATTGTCGGAATCGTCTTACGCAGAAGGGGCTGAAATATAGGTTGGAAGTGTTTAGGTCCCTGCAGACAGCTTGGGGGGTTAGGTCCTTGGACCTTATTCAAGCCGGTACTTTTATCTGCGAGTTTGCAGGGGTTGTTTTGACTAGGGAGCAGGCGCAACTCTTCGCAATGAATGGTGACTCTTCAATATATCCTAATCGGTTTTCGGAAAGATGGGCGGAATGGGGGGATTTGTCTCAAGTAGACCCAAAATATGTGCGTCCATCATATCCATCTATTCCTCCTCTAGATTTTTCTCTGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAACTCCAAATGTTTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCACATCTTATGCTATTTGCAATGGAGAATATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACGGGGAAGCTCTCTATATGTAACTGA 2043 0.5198 MDSSLSLHTPPNHNAFQQPQPPLQPPQPPQPPLLVPKPEPFWSALDHDDIGDELDLLTEFNRVTELFHLAFGGTNVVIPPNSFGPQPAACSHLLPSADVDSAVQEDPNSSTAAASDASRAIVPVADLTVRVAPRRKQSRQKELVRVMGLSAREDAELRETVRRTRLVYDSLRVYTAVEEEKRVAALAATKAAAVKEEEGTAVEGRTRRLRGDLRAAGLMRERGLWLHRQQRIVGAIPGIVVGDVFLFRMELCVFGLHGQIQAGIDYLPGSMSSCGEPIATSVIVSGGYEDDLDNGEVIIYTGQGGQEKNSSRQIADQKLESGNLALERSMHYGVEVRVIRGMRYEGSASASGKVYVYDGVYKIVDRWFDVGRSGFGVYKFKLWRIEGQPKMGSAILKEARSIRRSESDSNSLHCLSADMSNKKEKVAVRLFNDIDDYRDPLSYEYLPRTSFPQFVFHQSGQATGCNCVDGCGDGCFCAMKNGGDFPYTLQGHLVKGKPLIFECGPFCSCPPHCRNRLTQKGLKYRLEVFRSLQTAWGVRSLDLIQAGTFICEFAGVVLTREQAQLFAMNGDSSIYPNRFSERWAEWGDLSQVDPKYVRPSYPSIPPLDFSLDVSTMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04404 680 SMART set_7 524 673 IPR001214 GO:0005515
Phac3g04404 680 Gene3D SET domain 393 680 IPR046341 -
Phac3g04404 680 MobiDBLite consensus disorder prediction 1 39 - -
Phac3g04404 680 Pfam SAD/SRA domain 233 388 IPR003105 -
Phac3g04404 680 Pfam SET domain 536 667 IPR001214 GO:0005515
Phac3g04404 680 SMART preset_2 416 508 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phac3g04404 680 SUPERFAMILY SET domain 426 678 IPR046341 -
Phac3g04404 680 SUPERFAMILY PUA domain-like 216 399 IPR015947 -
Phac3g04404 680 ProSiteProfiles SET domain profile. 524 667 IPR001214 GO:0005515
Phac3g04404 680 SMART G9a_1 229 388 IPR003105 -
Phac3g04404 680 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 105 668 - -
Phac3g04404 680 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 74 680 IPR025794 GO:0016571
Phac3g04404 680 Gene3D - 231 392 IPR036987 -
Phac3g04404 680 ProSiteProfiles Pre-SET domain profile. 463 521 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phac3g04404 680 ProSiteProfiles YDG domain profile. 234 384 IPR003105 -
Phac3g04404 680 MobiDBLite consensus disorder prediction 15 38 - -
Phac3g04404 680 Pfam Pre-SET motif 419 516 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04404 Phac-Chr3 42266568 42271951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04404 130 669 Su(var)3-9 homologs AT5G04940 37.568 7.87e-104 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phac3g04404 SAD_SRA 1.2e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04404 - K11420 pvu:PHAVU_003G282200g 1117.06