LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g04281	ATGGAAGAAGACCAAGAGGCTCAGCATCAAAGGGAAAATCGAGGGTCGCTTCCCGGGGAAGGAGAAGGGTTAGAGGGCAATGGAGGAGGTGTTCACGACAATGGGATTCGTTCTTTCACGTGTCATATCTGCAACAAAGGTTTCAGTTCAGGTAAAGCTCTTGGTGGGCACATGAGAATCCACAACCTTTCTAGAAAACAGGTTCACAAGGAGAAACAAGGTGGTGGTGATGTGAAATCCAAGGCGGCGAAATGGGTGTTGGTGGATGGCAACCCTGTTTGTTCTGTTTGTGGAAAGAGTTTTTCTTCGTTGAAGTCCTTGTTTGGGCACATGAGGTCTCACACTGAGAAGGCCAAGAGGGGAATTCAAAGCGTCACTCCGATCGTTGGTGCTTCCTCCAATTCCACTTCTTCCTCTACCCTTTCTGATGATTTTGCTGTTGATCTCTCTGGAGTTCTCAGGGGTTGGTCTGTGACTGCCAAGAGGGGCCGCAGAAGCCCTTCTTGCAGCAAATCGAATTCTGGTTTGGAAGATGGCGATGAGATTGAGCCACGGATGCAAGAGGCTGCGTATGAGCTCATGTTGCTGGCCAGAGGGAGTCCCAGGTGGGAGGAAGAGGTTGGTGCCGATCCGATTCAAGAACATCCGTGCAGAAAGAGGGGGCATGAAGAGGAGTTGTCGCAACCAGTTTTTGGGAATTCTGATGACGTGAAGAACAAGAAGAGAAACAGAAAGAAAGTGAAACTAACAGAATTAGCATCAACCGAGGAGGGGAACAGGTTCTCCAGCTGCAGAAAATGCAATACAACTTTCCAAAGTCACCAATCTTTGAAGGATCATCTATGCAGCCTTCAAAATTCCAAGAACATTCAGCCTCAGTCAGATGGAAAAGAGGAGCATCATGCCAAAACAAACATAAAAACAGGAACTGTTCTTGAGGGTAGTGGTTTGGAAGCCATGAAGTGTGAAGTTTTGAACAAGACTTTCTCAGCTGTTGAAGCCATTGGGGAGCACAAGAGATCTGATTGGACCAGCATGGCAGAAGCTGAGTCAGCTCAAACAACCTCTTCAAACGTGGAAACTGGTCAGAATTGTTCCAAGGTTTTTAGTTTTGATCTTAATGAGATTCCTGCTATGGATGTGGAAGAGGGTGTTCAATCAGACTTGTTTATTCCTGCCAATATCATGACATCATCCAGTTATGATTCCTCTTCCTAA	1218	0.4647	MEEDQEAQHQRENRGSLPGEGEGLEGNGGGVHDNGIRSFTCHICNKGFSSGKALGGHMRIHNLSRKQVHKEKQGGGDVKSKAAKWVLVDGNPVCSVCGKSFSSLKSLFGHMRSHTEKAKRGIQSVTPIVGASSNSTSSSTLSDDFAVDLSGVLRGWSVTAKRGRRSPSCSKSNSGLEDGDEIEPRMQEAAYELMLLARGSPRWEEEVGADPIQEHPCRKRGHEEELSQPVFGNSDDVKNKKRNRKKVKLTELASTEEGNRFSSCRKCNTTFQSHQSLKDHLCSLQNSKNIQPQSDGKEEHHAKTNIKTGTVLEGSGLEAMKCEVLNKTFSAVEAIGEHKRSDWTSMAEAESAQTTSSNVETGQNCSKVFSFDLNEIPAMDVEEGVQSDLFIPANIMTSSSYDSSS*	406

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g04281	405	FunFam	Zinc finger protein	92	115	-	-
	Phac3g04281	405	SUPERFAMILY	beta-beta-alpha zinc fingers	93	281	IPR036236	-
	Phac3g04281	405	ProSitePatterns	Zinc finger C2H2 type domain signature.	41	61	IPR013087	-
	Phac3g04281	405	ProSiteProfiles	Zinc finger C2H2 type domain profile.	92	119	IPR013087	-
	Phac3g04281	405	PANTHER	C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED	190	382	IPR044653	GO:0003700
	Phac3g04281	405	SMART	c2h2final6	92	114	IPR013087	-
	Phac3g04281	405	SMART	c2h2final6	39	61	IPR013087	-
	Phac3g04281	405	SMART	c2h2final6	262	282	IPR013087	-
	Phac3g04281	405	Gene3D	Classic Zinc Finger	93	120	-	-
	Phac3g04281	405	Gene3D	Classic Zinc Finger	28	89	-	-
	Phac3g04281	405	MobiDBLite	consensus disorder prediction	1	31	-	-
	Phac3g04281	405	Pfam	C2H2-type zinc finger	39	61	-	-
	Phac3g04281	405	Pfam	C2H2-type zinc finger	93	115	-	-
	Phac3g04281	405	MobiDBLite	consensus disorder prediction	218	243	-	-
	Phac3g04281	405	SUPERFAMILY	beta-beta-alpha zinc fingers	37	65	IPR036236	-
	Phac3g04281	405	ProSiteProfiles	Zinc finger C2H2 type domain profile.	39	66	IPR013087	-
	Phac3g04281	405	MobiDBLite	consensus disorder prediction	1	18	-	-
	Phac3g04281	405	ProSitePatterns	Zinc finger C2H2 type domain signature.	94	114	IPR013087	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g04281	37	127	C2H2 Transcription Factor Family	AT2G26940	35.398	2.99e-13	68.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Phac3g04281		zf-C2H2_6	4e-09	CL0361

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g04281	-		-	vra:106765955	578.556