Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04280 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGATGCCTACCTCCCGCCAGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTACCCACTTGACAGAGAATCGAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATTTGAAAGGTTTCGGGATGGCTATACCGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTGTAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAATCCAGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGGCGGCGTGAATCACGTGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGATCTGAGTCCCCGTAGTAGGAGGCACGAGCGCTCACGCTCACGATCACATTCTCGTTCGCGTTCGCGTTCGCGTTCACGTTCTCGATCCCGATCCCATTCTCACTCGCATTCTCATTCCCGATCTCAGTCTCGTGGATATGATGACCATCCAAGATCGAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGACAAGAGCGAAAGACGTAGGGATCGTGATGATAAACGACAGCGGGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTTGTGAAAGGTCTTTCGCAAAAGACAACCGATGAAGATCTATACCAAATCCTTGCGGAATGGGGGCCCCTTCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTCTTGTTGTCGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACAGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGGACATCCTGCTATCAGTGTAATGAGCCCCGAACTGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAGCAGCTTCCGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTAGTGAGAGATAAGTTCACTCATGTCTCAAGGGGATTTGCATTTGTGCACTTTTATTCGGTGGAAGACGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCAAGCAGTCTTGCGGCTGCTGCTATTGAAGCTGCAACATTTGCCCAACAGTATGATTCAGTAGGATGGGCTCCGAAAGAATATAATCCAGATGACAAACTATCTACTGGTCCAGAGCAACCTGGCACTGGAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGTTTTTATTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTCCTAAAACGTCTGATGGTACTGGAAGTAAAAAGGTCATTTCTGCCCCAGCTACTACTGTTACCTCAGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTCCAGGCTGCAGCTACAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCAAAGGAAATAAAACTCGCATCAAAGAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTATTGACAATGTGGAAGCAGAGGAGCCATGAAGGACAGGCTACTAGAGTTGCTCTGGAAGACAATCAGCCTTCTGTTTCAGTCGATGATAGGTCATATTCTACCGGACATTCTGCTAAGAATAAGTCAAAAAATGAGACTATGGTAAGGGACTCTAATGCTTCAAATCCAGGAATCCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCAGGCACAGCCACGGCCGGTTAGTAATAGTATTGGAGGCACTGTGATGGGGGTCATAAGGGGCTCAGGAAGAGGGGTTGCTAAATCAGATACTTATTCAGGTTCTACATCTGTTGCGTCATCTATGCTTAGTTCATCTTCAGCAAATGTTGATCCACATACAGTTGCTACTCCCTTTAGAACTGATGTATCTGCCCTGGGTTCATATACACCATCTGCCACAATTGGAAGTGGCCGAAGAAGGTTTTCGGAAATGCCTCTTCCTGCTTCAGCTCACAAGGAACAACCTCAGTCAACTTACCGGGATCGTGCTGCTGAGAGGAGGAGTTTGTATGGCTCGTCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGAGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCGTTCCCTCCTGGGGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACATTGATACCTTCGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAAGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACAGAACATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGTGACAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAGATGTCAGACAGTTAA 3126 0.4575 MDPGRYALHQGWDNNSALEGYGAVHEPNFRDAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEFERFRDGYTGIENYGDRGYDKPARFVGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGDLSPRSRRHERSRSRSHSRSRSRSRSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREGSYTESRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAASGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGPEQPGTGVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPPKTSDGTGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSVDDRSYSTGHSAKNKSKNETMVRDSNASNPGIHTTLAQVAAIDSQAQPRPVSNSIGGTVMGVIRGSGRGVAKSDTYSGSTSVASSMLSSSSANVDPHTVATPFRTDVSALGSYTPSATIGSGRRRFSEMPLPASAHKEQPQSTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRVVGDVNIDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDS* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04280 1041 Pfam G-patch domain 964 1005 IPR000467 GO:0003676
Phac3g04280 1041 MobiDBLite consensus disorder prediction 228 280 - -
Phac3g04280 1041 SUPERFAMILY RNA-binding domain, RBD 276 371 IPR035979 GO:0003676
Phac3g04280 1041 Gene3D - 252 385 IPR012677 -
Phac3g04280 1041 Gene3D - 426 546 IPR012677 -
Phac3g04280 1041 PANTHER RNA-BINDING PROTEIN 177 1036 - -
Phac3g04280 1041 MobiDBLite consensus disorder prediction 29 69 - -
Phac3g04280 1041 MobiDBLite consensus disorder prediction 47 69 - -
Phac3g04280 1041 SMART zf_4 390 414 IPR001876 -
Phac3g04280 1041 SMART rrm1_1 444 519 IPR000504 GO:0003723
Phac3g04280 1041 SMART rrm1_1 287 362 IPR000504 GO:0003723
Phac3g04280 1041 SMART G-patch_5 961 1007 IPR000467 GO:0003676
Phac3g04280 1041 MobiDBLite consensus disorder prediction 130 283 - -
Phac3g04280 1041 MobiDBLite consensus disorder prediction 634 660 - -
Phac3g04280 1041 Pfam OCRE domain 585 633 IPR041591 -
Phac3g04280 1041 CDD OCRE_SUA_like 582 634 IPR035623 -
Phac3g04280 1041 ProSiteProfiles G-patch domain profile. 963 1009 IPR000467 GO:0003676
Phac3g04280 1041 MobiDBLite consensus disorder prediction 196 227 - -
Phac3g04280 1041 MobiDBLite consensus disorder prediction 561 584 - -
Phac3g04280 1041 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 445 511 IPR000504 GO:0003723
Phac3g04280 1041 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 347 IPR000504 GO:0003723
Phac3g04280 1041 ProSitePatterns Zinc finger RanBP2-type signature. 392 411 IPR001876 -
Phac3g04280 1041 MobiDBLite consensus disorder prediction 130 195 - -
Phac3g04280 1041 MobiDBLite consensus disorder prediction 742 772 - -
Phac3g04280 1041 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 443 523 IPR000504 GO:0003723
Phac3g04280 1041 ProSiteProfiles Zinc finger RanBP2 type profile. 388 417 IPR001876 -
Phac3g04280 1041 CDD RRM1_RRM2_RBM5_like 441 521 - -
Phac3g04280 1041 Gene3D - 386 418 - -
Phac3g04280 1041 SUPERFAMILY RNA-binding domain, RBD 441 530 IPR035979 GO:0003676
Phac3g04280 1041 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 366 IPR000504 GO:0003723
Phac3g04280 1041 MobiDBLite consensus disorder prediction 877 907 - -
Phac3g04280 1041 SUPERFAMILY Ran binding protein zinc finger-like 383 418 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04280 Phac-Chr3 41392934 41400985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04280 285 507 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 2.13e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04280 K13094 - gmx:100787998 1665.59