Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04277 ATGATGGACAAACTAGGAGACGATGGTCTTGTTGTCGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACAGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGGACATCCTGCTATCAGTGTAATGAGCCCCGAACTGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAGCAGCTTCCGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTAGTGAGAGATAAGTTCACTCATGTCTCAAGGGGATTTGCATTTGTGCACTTTTATTCGGTGGAAGACGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCAAGCAGTCTTGCGGCTGCTGCTATTGAAGCTGCAACATTTGCCCAACAGTATGATTCAGTAGGATGGGCTCCGAAAGAATATAATCCAGATGACAAACTATCTACTGGTCCAGAGCAACCTGGCACTGGAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGTTTTTATTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTCCTAAAACGTCTGATGGTACTGGAAGTAAAAAGGTCATTTCTGCCCCAGCTACTACTGTTACCTCAGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTCCAGGCTGCAGCTACAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCAAAGGAAATAAAACTCGCATCAAAGAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTATTGACAATGTGGAAGCAGAGGAGCCATGAAGGACAGGCTACTAGAGTTGCTCTGGAAGACAATCAGCCTTCTGTTTCAGTCGATGATAGGTCATATTCTACCGGACATTCTGCTAAGAATAAGTCAAAAAATGAGACTATGGTAAGGGACTCTAATGCTTCAAATCCAGGAATCCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCAGGCACAGCCACGGCCGGTTAGTAATAGTATTGGAGGCACTGTGATGGGGGTCATAAGGGGCTCAGGAAGAGGGGTTGCTAAATCAGATACTTATTCAGGTTCTACATCTGTTGCGTCATCTATGCTTAGTTCATCTTCAGCAAATGTTGATCCACATACAGTTGCTACTCCCTTTAGAACTGATGTATCTGCCCTGGGTTCATATACACCATCTGCCACAATTGGAAGTGGCCGAAGAAGGTTTTCGGAAATGCCTCTTCCTGCTTCAGCTCACAAGGAACAACCTCAGTCAACTTACCGGGATCGTGCTGCTGAGAGGAGGAGTTTGTATGGCTCGTCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGAGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCGTTCCCTCCTGGGGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACATTGATACCTTCGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAAGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACAGAACATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGTGACAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAGATGTCAGACAGTTAA 2100 0.4438 MMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAASGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGPEQPGTGVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPPKTSDGTGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSVDDRSYSTGHSAKNKSKNETMVRDSNASNPGIHTTLAQVAAIDSQAQPRPVSNSIGGTVMGVIRGSGRGVAKSDTYSGSTSVASSMLSSSSANVDPHTVATPFRTDVSALGSYTPSATIGSGRRRFSEMPLPASAHKEQPQSTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRVVGDVNIDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDS* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04277 699 SMART zf_4 48 72 IPR001876 -
Phac3g04277 699 SUPERFAMILY RNA-binding domain, RBD 99 188 IPR035979 GO:0003676
Phac3g04277 699 Pfam OCRE domain 243 291 IPR041591 -
Phac3g04277 699 Gene3D - 43 76 - -
Phac3g04277 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 169 IPR000504 GO:0003723
Phac3g04277 699 CDD RRM1_RRM2_RBM5_like 99 179 - -
Phac3g04277 699 ProSitePatterns Zinc finger RanBP2-type signature. 50 69 IPR001876 -
Phac3g04277 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723
Phac3g04277 699 ProSiteProfiles Zinc finger RanBP2 type profile. 46 75 IPR001876 -
Phac3g04277 699 MobiDBLite consensus disorder prediction 219 242 - -
Phac3g04277 699 Pfam G-patch domain 622 663 IPR000467 GO:0003676
Phac3g04277 699 Gene3D - 84 206 IPR012677 -
Phac3g04277 699 MobiDBLite consensus disorder prediction 292 318 - -
Phac3g04277 699 CDD OCRE_SUA_like 240 292 IPR035623 -
Phac3g04277 699 PANTHER RNA-BINDING PROTEIN 1 694 - -
Phac3g04277 699 SMART rrm1_1 102 177 IPR000504 GO:0003723
Phac3g04277 699 MobiDBLite consensus disorder prediction 535 565 - -
Phac3g04277 699 ProSiteProfiles G-patch domain profile. 621 667 IPR000467 GO:0003676
Phac3g04277 699 SMART G-patch_5 619 665 IPR000467 GO:0003676
Phac3g04277 699 MobiDBLite consensus disorder prediction 400 430 - -
Phac3g04277 699 SUPERFAMILY Ran binding protein zinc finger-like 41 76 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04277 Phac-Chr3 41392934 41400985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04277 600 666 C2H2 Transcription Factor Family AT5G26610 40.299 9.27e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04277 K13094 - gmx:100777686 1155.97