Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04275 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGTTGGTGGTTCCTATGATGAGAGAAGGTTTCTAGATGAAAGGTATCCAAGGGATCCAGTTTATCAGAGAAATAATTTCCACCCTGACATTTTGGACAGGGATGCCTACCTCCCGCCAGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTACCCACTTGACAGAGAATCGAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATTTGAAAGGTTTCGGGATGGCTATACCGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTGTAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAATCCAGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGGCGGCGTGAATCACGTGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGATCTGAGTCCCCGTAGTAGGAGGCACGAGCGCTCACGCTCACGATCACATTCTCGTTCGCGTTCGCGTTCGCGTTCACGTTCTCGATCCCGATCCCATTCTCACTCGCATTCTCATTCCCGATCTCAGTCTCGTGGATATGATGACCATCCAAGATCGAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGACAAGAGCGAAAGACGTAGGGATCGTGATGATAAACGACAGCGGGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTTGTGAAAGGTCTTTCGCAAAAGACAACCGATGAAGATCTATACCAAATCCTTGCGGAATGGGGGCCCCTTCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTCTTGTTGTCGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACAGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGGACATCCTGCTATCAGTGTAATGAGCCCCGAACTGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAGCAGCTTCCGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTAGTGAGAGATAAGTTCACTCATGTCTCAAGGGGATTTGCATTTGTGCACTTTTATTCGGTGGAAGACGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCAAGCAGTCTTGCGGCTGCTGCTATTGAAGCTGCAACATTTGCCCAACAGTATGATTCAGTAGGATGGGCTCCGAAAGAATATAATCCAGATGACAAACTATCTACTGGTCCAGAGCAACCTGGCACTGGAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGTTTTTATTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTCCTAAAACGTCTGATGGTACTGGAAGTAAAAAGGTCATTTCTGCCCCAGCTACTACTGTTACCTCAGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTCCAGGCTGCAGCTACAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCAAAGGAAATAAAACTCGCATCAAAGAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTATTGACAATGTGGAAGCAGAGGAGCCATGAAGGACAGGCTACTAGAGTTGCTCTGGAAGACAATCAGCCTTCTGTTTCAGTCGATGATAGGTCATATTCTACCGGACATTCTGCTAAGAATAAGTCAAAAAATGAGACTATGGTAAGGGACTCTAATGCTTCAAATCCAGGAATCCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCAGGCACAGCCACGGCCGGTTAGTAATAGTATTGGAGGCACTGTGATGGGGGTCATAAGGGGCTCAGGAAGAGGGGTTGCTAAATCAGATACTTATTCAGGTTCTACATCTGTTGCGTCATCTATGCTTAGTTCATCTTCAGCAAATGTTGATCCACATACAGTTGCTACTCCCTTTAGAACTGATGTATCTGCCCTGGGTTCATATACACCATCTGCCACAATTGGAAGTGGCCGAAGAAGGTTTTCGGAAATGCCTCTTCCTGCTTCAGCTCACAAGGAACAACCTCAGTCAACTTACCGGGATCGTGCTGCTGAGAGGAGGAGTTTGTATGGCTCGTCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGAGATTCAAGTAAGACTACTTAA 2874 0.4523 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFLDERYPRDPVYQRNNFHPDILDRDAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEFERFRDGYTGIENYGDRGYDKPARFVGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGDLSPRSRRHERSRSRSHSRSRSRSRSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREGSYTESRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAASGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGPEQPGTGVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPPKTSDGTGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSVDDRSYSTGHSAKNKSKNETMVRDSNASNPGIHTTLAQVAAIDSQAQPRPVSNSIGGTVMGVIRGSGRGVAKSDTYSGSTSVASSMLSSSSANVDPHTVATPFRTDVSALGSYTPSATIGSGRRRFSEMPLPASAHKEQPQSTYRDRAAERRSLYGSSSSVGNDLADLDIGDSSKTT* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04275 957 SMART rrm1_1 477 552 IPR000504 GO:0003723
Phac3g04275 957 SMART rrm1_1 320 395 IPR000504 GO:0003723
Phac3g04275 957 MobiDBLite consensus disorder prediction 775 805 - -
Phac3g04275 957 MobiDBLite consensus disorder prediction 163 316 - -
Phac3g04275 957 MobiDBLite consensus disorder prediction 229 260 - -
Phac3g04275 957 ProSiteProfiles Zinc finger RanBP2 type profile. 421 450 IPR001876 -
Phac3g04275 957 MobiDBLite consensus disorder prediction 890 957 - -
Phac3g04275 957 CDD RRM1_RRM2_RBM5_like 474 554 - -
Phac3g04275 957 MobiDBLite consensus disorder prediction 667 693 - -
Phac3g04275 957 SUPERFAMILY RNA-binding domain, RBD 474 563 IPR035979 GO:0003676
Phac3g04275 957 ProSitePatterns Zinc finger RanBP2-type signature. 425 444 IPR001876 -
Phac3g04275 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 399 IPR000504 GO:0003723
Phac3g04275 957 Gene3D - 420 451 - -
Phac3g04275 957 MobiDBLite consensus disorder prediction 594 617 - -
Phac3g04275 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 380 IPR000504 GO:0003723
Phac3g04275 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 544 IPR000504 GO:0003723
Phac3g04275 957 SUPERFAMILY Ran binding protein zinc finger-like 416 451 IPR036443 -
Phac3g04275 957 Gene3D - 459 579 IPR012677 -
Phac3g04275 957 Gene3D - 285 419 IPR012677 -
Phac3g04275 957 MobiDBLite consensus disorder prediction 163 228 - -
Phac3g04275 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 476 556 IPR000504 GO:0003723
Phac3g04275 957 SMART zf_4 423 447 IPR001876 -
Phac3g04275 957 MobiDBLite consensus disorder prediction 933 957 - -
Phac3g04275 957 MobiDBLite consensus disorder prediction 64 86 - -
Phac3g04275 957 PANTHER RNA-BINDING PROTEIN 206 936 - -
Phac3g04275 957 Pfam OCRE domain 618 666 IPR041591 -
Phac3g04275 957 MobiDBLite consensus disorder prediction 261 313 - -
Phac3g04275 957 SUPERFAMILY RNA-binding domain, RBD 308 404 IPR035979 GO:0003676
Phac3g04275 957 CDD OCRE_SUA_like 615 667 IPR035623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04275 Phac-Chr3 41392934 41400985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04275 318 540 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 2.25e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04275 K13094 - gmx:100787998 1548.1