Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04258 ATGAATGATACAAAAGAGAATGAAGAAGCAGGGCAGAATGTGCCCGTGGCTGTGGAGGAAAATTTGGCTGAACCACAGGTTCAACCAGAAGTTTTGGATGCTCCTTTGTCCGTAGGGGATACTTCAATTCATGCTGAAAATGGGAGGGTAGAGGCAGAGGCACCAGTGGAGGATAAAATTGTGAAACCAGAAGCCAATTCTGAGTGCATTTCGCAACAAGATGTCCTAAATAGTCAAAATACAATAAACTCGGTCCCTGTTATAGACAGTGCTCCAGTTTTAAATAAAACCGAAGGTGAAAATGCATTAGATGTGAAGAACAAAGCAGAAGAACTTCCTCAGTGTGATATGGACATAGAGAATGATTCTAATGTTTGTCAAAACAATGCTGATGCTTCTGAAATGACTGCGGAGGTGAAGCCCAAAGCTTTTGAAGCTGAAAGTAAAACTTGCAATGATGGGGATTCCAACTCCGCACTCCCTATTCTTAACGAACCTAAAACAGCACATGTTGTTCAGACCGATATAAGAGCTGAAGTCAAGAGTGGATTAGACAATGAGAATAAGTATAACGAAAAGCAGGCTGCTGATGGACATGCAGATAATGGAAATTTGATCTCACAGAACTTGTATTTTTTGGATCCTGAATATTCATATGATGGTAATGAGTCGGGAACAGAAGATGAGCAGTCAGCTTTTATGAAAGAGCTTGAAACATTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTTTATAAAGAGGGGCTTAATTGCCTTAAGCTATGGAGATCTGTAAACAGATTGGGCGGCTATGATAAGGTCACGACATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTGAATGTGCCTATTGCTTCTAATTCCGAGCCAGTGAATGTTGAAAATCAGTGTGTCCAAGGATCAGCATCATCAGGTAGGGCACGGAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAAGGGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGCAAGAAATCATCAGACATGGTGAATGCAGTCAAAGTTGCTCACAGTAAACCATCTAAACCACAATTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATTAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTGGTTCCTGGACTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGCGGTGAGCCTGAACATTCTGACAATCCATGGGGGGTCACACCTTTCAAAAAGGTTGTGAGTTTGCCTTCAAGGATTGATACTCATCAGACATCTGCTGTGGTGACTTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGCAATCCGAATAG 1578 0.424 MNDTKENEEAGQNVPVAVEENLAEPQVQPEVLDAPLSVGDTSIHAENGRVEAEAPVEDKIVKPEANSECISQQDVLNSQNTINSVPVIDSAPVLNKTEGENALDVKNKAEELPQCDMDIENDSNVCQNNADASEMTAEVKPKAFEAESKTCNDGDSNSALPILNEPKTAHVVQTDIRAEVKSGLDNENKYNEKQAADGHADNGNLISQNLYFLDPEYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTTCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPIASNSEPVNVENQCVQGSASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKGSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSKPSKPQLDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04258 525 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 425 525 IPR002068 -
Phac3g04258 525 SMART ARID_2 224 314 - -
Phac3g04258 525 Gene3D - 227 325 IPR036431 GO:0003677
Phac3g04258 525 FunFam AT-rich interactive domain-containing protein 3 417 525 - -
Phac3g04258 525 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 111 524 IPR045147 GO:0006357
Phac3g04258 525 Gene3D - 388 525 IPR008978 -
Phac3g04258 525 SUPERFAMILY HSP20-like chaperones 434 521 IPR008978 -
Phac3g04258 525 CDD ARID 229 314 - -
Phac3g04258 525 MobiDBLite consensus disorder prediction 1 24 - -
Phac3g04258 525 FunFam AT-rich interactive domain-containing protein 3 227 326 - -
Phac3g04258 525 SMART bright_3 228 319 IPR001606 GO:0003677
Phac3g04258 525 SUPERFAMILY ARID-like 222 328 IPR036431 GO:0003677
Phac3g04258 525 Pfam Hsp20/alpha crystallin family 442 524 IPR002068 -
Phac3g04258 525 Pfam ARID/BRIGHT DNA binding domain 230 314 IPR001606 GO:0003677
Phac3g04258 525 CDD ACD_sHsps_p23-like 444 520 - -
Phac3g04258 525 ProSiteProfiles ARID domain profile. 227 318 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04258 Phac-Chr3 41279178 41288439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04258 211 523 ARID Transcription Factor Family AT1G76510 62.102 1.48e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phac3g04258 HSP20 4.9e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04258 - - gmx:100803374 829.32