Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04242 ATGATTCGAGTTGAGCTTGTGGCGTTGATGGTTCTCTTCGAAGGGTTATTTTCAGCTGGAGCTGTATCGGATAATTCCACTATACCTGCTTTGGTAAACATTGGAGTTCTCTATTCTTTCAATACCAGTGTTGGTAAAATGGTGAAAACTGCTGTAGAAGCGGCGGTTGAAGATGTAAATTCTGATCCATCTATTCTTGCTCAAACTACGTTGAAGCTCTCAATGCAAGAAGATACCAAATACAGAGGATTTTTGAGCATTGCTGAGGCCTTGCAGCTGATGGCGACACAAACTGTGGCTATAATTGGCCCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAGCTCCAAGTTCCTCTGCTATCATTTACAGCCACTGACCCTACCCTTTCTTCTCTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACATTTATGAAATGACTGCAATAGCAGACCTTGTTAACTACTTTGAATGGAGAGAGGTTATTGCAGTTTATGGTGATGATGACCATGGGAGGAATGGAATGGGTGCATTAGGGGATAAGCTAGCCGAGAGGCGTTGCAAGATTTCATTTAAAGCACCTATGACTCCTGAGGCAACTAGAGAGGAGATTACTGATGTACTTGTTCAGGTGGCCCTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGGCCAAAAGTGTTAAGTGTGGCAAAGTCTCTGGGGATGATGGAAAATGGGTATGTCTGGATAACAACTACTTTTCTCTCTACATGGTTGGATATAAATAGCCCTCTATCTTCTGATGCAACGGATGACATGCAAGGGGTCATTACACTTCGTATGTATGTACCAGATTCAAAGCTCAAAAGATGGTTTGTTTCTAGGTGGACAAACTTGACTACTACTGCTGGAAATACTGGTAATGGTACCCTTGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTGTTTGCTCTTGCTCATGCACTTGATGCATTTTTCAAACGAGGGAATCAAATTACATTTTCACATGATCCAAAGCTATCTCAAATACGTGGAGACAACATGCATCTTGATGCCGTGAAAATCTTCAACGAAGGAAATCTGTTGCGTAAACATATCTATGAGGTTAACATGACTGGAGTATCAGGCCTATTCAAGTATGCATCTGATGGAAACCTTGTTAATCCAGCTTATGAAATCATCAATGTGATTGGAACAGGAACCCGGAGGGTTGGTTATTGGTCTAATTACACTGGATTATCAATTGTTTCTCCAGAAGAACTTTATTCAAAACCACCTAATCGATCCAGTGCAAGCCAAAAGCTACTCCCTGTGTTTTGGCCTGGAGAAACAACCCAAAAGCCCCGTGGTTGGGTTTTTCCAAACAGTGGAAGGATGTTAAGAATTGGAGTTCCAAAAAGGGTTAGTTACCGGGATTTTGTTTCTCACGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTGAACTTGTTGCCCTATGCTGTCCCCTATAAATTTGTTTCATATGGAGATGGTGACAACAATCCTAGTAACACTGAACTTGTCCGTCTTATCACAGCGGATGTTTTTGATGCTGCAGTAGGTGACATTACAATTACAACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTGGTGGTAGTAGCATCAGTTAAGAAGATGGATTCCAATGCTTGGGCATTTCTTAAACCATTTACGCCAATGATGTGGACTGTCACAGCTATCTTTTTTCTATTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGATTTTAGGGGAACTCCCAAACAACAACTAGTCACAATTTTGTGGTTTAGTTTTTCAACCATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCTAGCTTGACATCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGACTCTTTAATAAGTAGCAAAGAGCCTATTGGCTACATGCAGGGTTCATTTACTCGAACTTATTTGATTGAGGAAATCGGTATTGATGAATCCAGACTGGTTCCTCTGAAAACAGCGGAAGAAACTGCAAAAGCACTAAACAATGGTCCCCAGAAGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCTTACATAGAACTTTTCCTTTCTAGCCGGTGCGACTTTAGCATTGTAGGTCCAGAGTTCACCCGAAATGGTTGGGGATTTGCTTTTCCACGGGACTCACCATTAGCAGTGGATCTTTCAACTGCCATATTGGAGTTGGCAGAGAATGGAGACTTACAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCCTGCTTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAAGTTGAGAAGCTTCTGGGGCCTCTATCTGGTGTGTGGATTGGCATGTATTCTTGCTCTCCTCATATATCTTGTTCAGACCATGAGACAGTACTCCAAGCACGGCCGGGAGGAACTCGAGTCTTCTGGCCATGGCTCAGGATCTTCACGTCTGCGCACATTCCTTTCATTTGTAGATGAAAAGGAAGAGATTGTCAAGAGCCGTGTGAAGAGAAAGAAAATAGAGGGCATGTCCTACAGGAGCACAAGTGAGGTAGGATCATCCATCATCTCCAACAAAGATTATTCTCAGGCATCATCAAACAGAATTGATTCAGCTACTGAAATCTAA 2823 0.4198 MIRVELVALMVLFEGLFSAGAVSDNSTIPALVNIGVLYSFNTSVGKMVKTAVEAAVEDVNSDPSILAQTTLKLSMQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTAFSDIYEMTAIADLVNYFEWREVIAVYGDDDHGRNGMGALGDKLAERRCKISFKAPMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDINSPLSSDATDDMQGVITLRMYVPDSKLKRWFVSRWTNLTTTAGNTGNGTLGLSTYGIFAYDTVFALAHALDAFFKRGNQITFSHDPKLSQIRGDNMHLDAVKIFNEGNLLRKHIYEVNMTGVSGLFKYASDGNLVNPAYEIINVIGTGTRRVGYWSNYTGLSIVSPEELYSKPPNRSSASQKLLPVFWPGETTQKPRGWVFPNSGRMLRIGVPKRVSYRDFVSHVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDNNPSNTELVRLITADVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKMDSNAWAFLKPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGTPKQQLVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIDSLISSKEPIGYMQGSFTRTYLIEEIGIDESRLVPLKTAEETAKALNNGPQKGGVAAYVDERAYIELFLSSRCDFSIVGPEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLKLRSFWGLYLVCGLACILALLIYLVQTMRQYSKHGREELESSGHGSGSSRLRTFLSFVDEKEEIVKSRVKRKKIEGMSYRSTSEVGSSIISNKDYSQASSNRIDSATEI* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04242 940 FunFam Glutamate receptor 469 585 - -
Phac3g04242 940 FunFam Glutamate receptor 148 299 - -
Phac3g04242 940 FunFam Glutamate receptor 585 715 - -
Phac3g04242 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 889 IPR015683 -
Phac3g04242 940 PIRSF IGluLR_plant 1 939 IPR017103 -
Phac3g04242 940 SMART GluR_14 475 816 IPR001320 GO:0015276|GO:0016020
Phac3g04242 940 Pfam Receptor family ligand binding region 48 412 IPR001828 -
Phac3g04242 940 FunFam Glutamate receptor 711 818 - -
Phac3g04242 940 Gene3D - 585 713 - -
Phac3g04242 940 Gene3D - 469 584 - -
Phac3g04242 940 Pfam Bacterial extracellular solute-binding proteins, family 3 531 814 IPR001638 -
Phac3g04242 940 CDD GluR_Plant 472 814 - -
Phac3g04242 940 Gene3D - 755 821 - -
Phac3g04242 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Phac3g04242 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Phac3g04242 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Phac3g04242 940 Gene3D - 148 427 - -
Phac3g04242 940 CDD PBP1_GABAb_receptor_plant 33 430 IPR044440 -
Phac3g04242 940 SUPERFAMILY Periplasmic binding protein-like I 29 466 IPR028082 -
Phac3g04242 940 SUPERFAMILY Periplasmic binding protein-like II 449 816 - -
Phac3g04242 940 Gene3D - 50 402 - -
Phac3g04242 940 Pfam Ligand-gated ion channel 815 847 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04242 Phac-Chr3 41105567 41110729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04242 26 916 Ion Channels AT3G51480 59.060 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04242 K05387 - gmx:100788917 1665.59