Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04231 ATGCCGAAGGTTAAAGCTGATACTGCAGCTTCCGATAACAGGTTGAAGCGCAAGGGCGCTGGTGCTGGAAGGAAACAATCGAAGAAAGCTGCTAAGGATCCTAACAAACCTAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGCAGTTTAAGAAGGAACATCCAACCAACAAATCTGTGGCTGTTGTTGGTAAAGCTGGCGGTGATAGATGGAAATCTTTGTCCGATGCCGAGAAAGCTCCCTTCATTGCTAGGGCTGAGAAGAAGAAAGAAGAGTACGAGAAGAGTATCTCAGCCTATAATAAGAAATTGGAAGGAAAACATTCAGAGGAAGAAGAGTCTGACAAGTCAAAATCTGAAGTTAACGATGAGGAGGAAGATGAGGAGGACGAGGAGGATGATGAGTGA 423 0.4468 MPKVKADTAASDNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPTNKSVAVVGKAGGDRWKSLSDAEKAPFIARAEKKKEEYEKSISAYNKKLEGKHSEEEESDKSKSEVNDEEEDEEDEEDDE* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04231 140 SMART hmgende2 36 107 IPR009071 -
Phac3g04231 140 MobiDBLite consensus disorder prediction 76 121 - -
Phac3g04231 140 Gene3D High mobility group box domain 21 122 IPR036910 -
Phac3g04231 140 SUPERFAMILY HMG-box 25 108 IPR036910 -
Phac3g04231 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Phac3g04231 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 139 IPR031061 -
Phac3g04231 140 MobiDBLite consensus disorder prediction 1 140 - -
Phac3g04231 140 Coils Coil 88 139 - -
Phac3g04231 140 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Phac3g04231 140 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Phac3g04231 140 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Phac3g04231 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Phac3g04231 140 MobiDBLite consensus disorder prediction 122 140 - -
Phac3g04231 140 CDD HMG-box_AtHMGB1-like 38 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04231 Phac-Chr3 41033551 41035397 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phac3g04231 HMG_box 7e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04231 K25507 - gmx:100499992 189.504