Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04220 ATGGGAGGTGACAGTGCCGTTGAGGAATCCGAAGGGGTCAACGTCAACATCAATGTTCGCTGTTCTAACGGCTCTAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCCTTCAAGGATCTCGTTGCTCGCACCTGCGACATGCCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAGGACGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTTGTGGTTCTGCACCTACTAATCCAACTGGCGGGACCAGTACTAGCAGCACCGATACCAATACCACAACAAATAATGCGAGAGGTGCTGGTGCCAATGAAGGTGGGAGTTTAGGAGGAGTTGGCTTTGGAGCTTCGCTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGCTTTATTTGGTGAGGGATTTCCTGATCTAGAACAGATGCAGCAGCCATTTCTTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCGCCTGCCATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCCAGTACTCTCCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGATAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGCCATGCAACGGACCAATCAACTAATCCCTCAATTACTAGTTCTGAAGCAACTGCTGGTTCTCACTTACCTAATACTAACCCACTTCCAAATCCTTGGTCCTCTTCTGGTGCTGCAGGTGCTCAAAATAACACTAGTAGGTCGTCAGCCACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTGGTCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTATTGACCCAGTTAATGCAAAATCCAGCTATATCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAACCAGATTCTTGGTGCTAATACTGAGCAGCGTGGCATGCCTGATTCAAATTCTCTTAGAGAAGTAATGCAAAATCCGGAATTCCTTCGCTTGTTTTCTTCACCTGAGACATTGCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAGCAATCAACACGGGAATCTGGTCAAACTGGCCAAGGCACTGGACCTATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGATACACAAGAGAACATAAGAGCTCTTATTGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAATAG 1608 0.4552 MGGDSAVEESEGVNVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARTCDMPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVCGSAPTNPTGGTSTSSTDTNTTTNNARGAGANEGGSLGGVGFGASLFPGLGINGTGGNALFGEGFPDLEQMQQPFLSNPNLVREIMNSPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTHGGHATDQSTNPSITSSEATAGSHLPNTNPLPNPWSSSGAAGAQNNTSRSSATGVDARQQGPTGLGGLGLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDSNSLREVMQNPEFLRLFSSPETLQQALLSQLGQQQSTRESGQTGQGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04220 535 Gene3D - 187 245 - -
Phac3g04220 535 MobiDBLite consensus disorder prediction 86 110 - -
Phac3g04220 535 MobiDBLite consensus disorder prediction 275 341 - -
Phac3g04220 535 Gene3D - 12 99 - -
Phac3g04220 535 SUPERFAMILY UBA-like 489 531 IPR009060 GO:0005515
Phac3g04220 535 CDD UBA_PLICs 493 531 - -
Phac3g04220 535 Gene3D - 475 535 - -
Phac3g04220 535 CDD Ubl_Dsk2p_like 15 87 - -
Phac3g04220 535 SMART uba_6 493 531 IPR015940 -
Phac3g04220 535 FunFam Ubiquitin domain-containing protein DSK2b 189 245 - -
Phac3g04220 535 PANTHER UBIQUILIN 15 530 IPR015496 -
Phac3g04220 535 MobiDBLite consensus disorder prediction 275 354 - -
Phac3g04220 535 SMART ubq_7 15 86 IPR000626 GO:0005515
Phac3g04220 535 Pfam UBA/TS-N domain 493 529 IPR015940 -
Phac3g04220 535 FunFam Ubiquitin domain-containing protein DSK2b 12 98 - -
Phac3g04220 535 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 487 532 IPR015940 -
Phac3g04220 535 Pfam Ubiquitin family 17 85 IPR000626 GO:0005515
Phac3g04220 535 MobiDBLite consensus disorder prediction 438 460 - -
Phac3g04220 535 FunFam Ubiquitin domain-containing protein DSK2b 476 534 - -
Phac3g04220 535 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Phac3g04220 535 SMART CBM 192 231 IPR006636 -
Phac3g04220 535 SMART CBM 356 397 IPR006636 -
Phac3g04220 535 SMART CBM 138 179 IPR006636 -
Phac3g04220 535 SMART CBM 401 435 IPR006636 -
Phac3g04220 535 SUPERFAMILY Ubiquitin-like 15 103 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04220 Phac-Chr3 40961985 40969910 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04220 K04523 - gmx:100776447 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g04220 3 40961985 40969910 Phac3g04220 3 40961985 40969910 ECH
Phac2g01810 2 20332109 20339131 Phac3g04220 3 40961985 40969910 PCT