Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04095 ATGGGACGTGTGATCCGTGCGCAGCGTAAGGGTGCGGGCTCAGTCTTCAAGTCCCACACTCACCACCGCAAGGGTCCGGCTCGCTTCCGCAGTCTCGACTTTGGGGAGCGGAACGGCTACCTTAAGGGTGTCGTCACCGACGTCATCCATGACCCTGGCCGCGGCGCCCCACTTGCTAAGGTTACTTTCCGCCATCCCTTCAGATACAAGAAGCAAAATGAACTCTTCGTTGCCGCCGAAGGCCTTTATACTGGTCAGTTCATCTACTGCGGCAAGAAGGCCACTCTCGTAGTTGGTAATGTTTTGCCCATTCGCTCTATCCCTGAGGGAGCTGTTATATGCAACGTTGAGCACCATGTCGGTGACCGTGGTGTCTTCGCTAGGGCTTCCGGCGACTATGCCATCGTTATCAGTCACAATCCTGATAATGACACATCTAGGATTAAGCTTCCATCTGGTGCGAAGAAGATTGTTCCCAGTGACTGCAGGGCCATGATTGGGCAAGTTGCAGGTGGTGGAAGAACTGAGAAGCCTCTTCTTAAGGCTGGAAATGCTTACCACAAGTTTAGAGTGAAGAGGAATTGCTGGCCGAAGGTGCGTGGTGTTGCTATGAATCCTGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGTCACGCCAGTACTGTCAGGCGTGATGCTCCTCCTGGACAAAAGGTTGGTCTCATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGCTGCTGCAACTGCTTCCAAGGCTGACAAGCGTAAGGGTGCGGGCTCAGTCTTCAAGTCCCACACTCACCACCGCAAGGGTCCGGCTCGCTTCCGCAGTCTCGACTTTGGGGAGCGGAACGGCTACCTCAAGGGTGTCGTCACCGACGTCATCCACGACCCTGGCCGCGGTGCCCCACTTGCCAAGGTTACTTTCCGCCATCCCTTCAGATACAAGAAGCAAAATGAGCTCTTCGTTGCCGCCGAAGGCCTTTATACTGGTCAGTTCATCTACTGCGGCAAGAAGGCCACTCTCGTAGTTGGTAATGTTTTGCCCATTCGCTCTATTCCTGAAGGAGCTGTTATATGCAATGTTGAGCACCATGTCGGTGACCGTGGTGTCTTCGCTAGGGCTTCCGGCGACTATGCCATCGTGCGTGGTGTTGCTATGAATCCTGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGTCACGCCAGTACTGTCAGGCGTGATGCTCCTCCTGGACAAAAGGTTGGTCTCATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGCTGCTGCAACTGCTTCCAAGGCTGATAAGCTTTTCGGAGTTCCAGTGGTTAATAACTAA 1371 0.539 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATASKADKRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARASGDYAIVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATASKADKLFGVPVVNN* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04095 456 SMART Ribosomal_L2_C_2 347 419 IPR022669 GO:0003735|GO:0005840|GO:0006412
Phac3g04095 456 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Phac3g04095 456 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Phac3g04095 456 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Phac3g04095 456 Hamap 50S ribosomal protein L2 [rplB]. 1 246 IPR023672 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Phac3g04095 456 Gene3D Ribosomal protein L2, domain 3 368 435 IPR014726 -
Phac3g04095 456 Gene3D Ribosomal protein L2, domain 3 170 248 IPR014726 -
Phac3g04095 456 SUPERFAMILY Nucleic acid-binding proteins 258 347 IPR012340 -
Phac3g04095 456 Pfam Ribosomal Proteins L2, C-terminal domain 349 387 IPR022669 GO:0003735|GO:0005840|GO:0006412
Phac3g04095 456 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Phac3g04095 456 SUPERFAMILY Translation proteins SH3-like domain 350 434 IPR008991 -
Phac3g04095 456 FunFam 60S ribosomal protein L2 170 247 - -
Phac3g04095 456 PANTHER RIBOSOMAL PROTEIN L2 386 444 IPR002171 GO:0003735|GO:0005840|GO:0006412
Phac3g04095 456 MobiDBLite consensus disorder prediction 246 273 - -
Phac3g04095 456 SMART Ribosomal_L2_2 262 341 IPR002171 GO:0003735|GO:0005840|GO:0006412
Phac3g04095 456 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Phac3g04095 456 FunFam 60S ribosomal protein L2 255 337 - -
Phac3g04095 456 FunFam 60S ribosomal protein L8 90 169 - -
Phac3g04095 456 Gene3D - 90 169 IPR014722 -
Phac3g04095 456 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Phac3g04095 456 MobiDBLite consensus disorder prediction 210 230 - -
Phac3g04095 456 Gene3D - 1 86 IPR012340 -
Phac3g04095 456 Gene3D - 257 337 IPR012340 -
Phac3g04095 456 FunFam 60S ribosomal protein L2 1 86 - -
Phac3g04095 456 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Phac3g04095 456 Pfam Ribosomal Proteins L2, RNA binding domain 264 341 IPR022666 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04095 Phac-Chr3 40290216 40298539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04095 384 446 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.063 1.57e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04095 K02938 - gmx:547677 529.25