Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04090 ATGAGAACACGAAATGCTGATCCCGCTTCTAAATCCGCAATCCCTAAGAAGACGCCACCGCCGAGGAAATCCCCTGCGGCGAAGCGCACCGTCGCCACCAAAACCAGAAGTACAAAGAAGAAAGAGGTCTCACCCGTCCCCGATTCCAACACCGATCAACCTCCTCTGGAACAGAAACCGGTAGCTAGTGGTAGCAGTACAAAAACTGTGAAAAGGAAGGCTCCAGGGAGACCTAGAGTTAAAGCAATTGATACTCCGAGTTTGGAAGAACAACGTGAGGCAGTAGCTGATGAAACTCCAATTGAAGGCAAAACCGAGGCTGCAGAGAAAGTGAAAGATGTTGGAGTTCTTGATGCAGATAGTATTGAGGGTGAGAAAGAGGGGGAACAAGGTGTTGGGTTTTCTGAAGAGAAGGAAGAGAAGTCGATGGAAGTGGATGAACCTGTTGTTGAAAAGGGAAATGACATGATGGAAGTTGAAGTAAATGCATCACAGGATGTTTCTGTTTCTTTTCAGCGACTAGGGCGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGGTGAGAAGGAGGGTGAGAAAGGAAAGGAAGAGTTAAAAAATCAAGAGGGGGACAAAGGAAAGGATAAGTTGAAAGAACAGGAAGTAGATGAAGGGAAGGAAGAGGTGAAAGTGCATGAAGGGGACAAAGGAAAGGAAGAGTTGAAAGAACTGGAAGGAGACAACGGAATGGGAGAGTTGAAAGAAGTCGATGGAGAGAAAGAAAAGGAAGAGATGAAAGAACTCGATGGAGAGAAAGAAAAGGAAGAGTTGAAAGAACTCGATGGAGTGAAAGGTAAGGAAGAGTTGAAAGAACATGAACCAGGGAAAGGTAAGGAGGAATTGATAGAATGTGAAGGAGAGAAAGGTAAAGAAGAGATGATAGAACAAGTAGGACATAAAGGAAAGGTTGAATTGAAAGAACAGGAAGTAGACAAAGGAAAGTTGAAAGAGCAGGATCCAGAGAAAGCAGAGGGAGAGGAAACAAGCCTTTTTGGACATGAAGAGAACACTGTTCCTCTTGGTCTAGAAGTGAAAGCCCAGATGCAAACAGAAGATGCTAATCCCATTAAAGATGGTGGTGAAGGACCAAAGAGTGGTGAAAAGTTAGATCTTCGAGAACAAGGGGGGAGGGTGGAGCTTTCTGAAGAAGATCCGGAGGAAGATCCAGAAGAACCTCTAGAAGAAATTGAGGCGTTGGAGCAGGAGCATATGGAACTGGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATTTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAACATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGGTGTGGAACTGCACCTAGCGAGGATAATGACACATTATTCTTGGGAAACATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTGAAGGACTATGGTATTGAAGGGGTTGAAAACATTACGCTCGTCCCAGATGTTCAACATGAGGGCTTGAGCCGGGGCTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGCCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATACGTGAACCTGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTGAGGGAGTTGTTTAAATCTTATGGTGAAATTGTGAGAATCGTGTTAGCACGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTTTACGCACGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAGTCAGAAATGGGTGATGTGGCATCAAAGATAAAAGTGAGAGCTAGACTCTCAAACCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGCAGCCTTTTCAAGACCAGGTAGGGGGTTTGGACGAGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGATAGGAGTTTCTATCACGGTGGACACAGTCAAATTGGAAGAATGGGTTTTCGGGATGACTTTGATTTTAATATGCATCCGGATTTCCATCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCTGGTAGCCGAGGTGCTTCATTTGCTGGACCATCTAGACCTTATCACGATAGAGCATGGTATGGTATGCCTGATGGAGGCCCCAGTGAGCCTATTCCTCCAAGGAGGACCTACTCCCCTGGTGGACAATTTGACATGCCTTTTGTGGGAAGACATTTTGATGATCCATATCTATACGATGACAATATGCATGGAATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGATTGGATTATGCAGATCCTCCTATATTTCATGGAACTCGTCACAATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCGCCAGACTATTATGGTTCTGATTACGGTAGAGGTTCGTATTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTAG 2799 0.4419 MRTRNADPASKSAIPKKTPPPRKSPAAKRTVATKTRSTKKKEVSPVPDSNTDQPPLEQKPVASGSSTKTVKRKAPGRPRVKAIDTPSLEEQREAVADETPIEGKTEAAEKVKDVGVLDADSIEGEKEGEQGVGFSEEKEEKSMEVDEPVVEKGNDMMEVEVNASQDVSVSFQRLGRPIMDLNISADNEDCTGEKEGEKGKEELKNQEGDKGKDKLKEQEVDEGKEEVKVHEGDKGKEELKELEGDNGMGELKEVDGEKEKEEMKELDGEKEKEELKELDGVKGKEELKEHEPGKGKEELIECEGEKGKEEMIEQVGHKGKVELKEQEVDKGKLKEQDPEKAEGEETSLFGHEENTVPLGLEVKAQMQTEDANPIKDGGEGPKSGEKLDLREQGGRVELSEEDPEEDPEEPLEEIEALEQEHMELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFFTHEAAVACVDGVNKSEMGDVASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPGRGFGRGRQPFNNRGNFNRDRSFYHGGHSQIGRMGFRDDFDFNMHPDFHQRQFGPQGAVRGGHYAGSRGASFAGPSRPYHDRAWYGMPDGGPSEPIPPRRTYSPGGQFDMPFVGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTRHNDSFGAGSRQYPPDYYGSDYGRGSYSSYYGGDGSHGHGYYY* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04090 932 CDD RRM_SF 617 691 - -
Phac3g04090 932 FunFam Heterogeneous nuclear ribonucleoprotein Q 387 511 - -
Phac3g04090 932 CDD RRM_SF 519 582 - -
Phac3g04090 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 517 602 IPR000504 GO:0003723
Phac3g04090 932 SMART rrm1_1 518 595 IPR000504 GO:0003723
Phac3g04090 932 SMART rrm1_1 438 511 IPR000504 GO:0003723
Phac3g04090 932 SMART rrm1_1 616 689 IPR000504 GO:0003723
Phac3g04090 932 CDD RRM_SF 439 508 - -
Phac3g04090 932 FunFam Heterogeneous nuclear ribonucleoprotein Q 517 601 - -
Phac3g04090 932 MobiDBLite consensus disorder prediction 1 147 - -
Phac3g04090 932 MobiDBLite consensus disorder prediction 184 298 - -
Phac3g04090 932 SUPERFAMILY RNA-binding domain, RBD 438 582 IPR035979 GO:0003676
Phac3g04090 932 SUPERFAMILY RNA-binding domain, RBD 606 713 IPR035979 GO:0003676
Phac3g04090 932 MobiDBLite consensus disorder prediction 77 147 - -
Phac3g04090 932 Coils Coil 256 276 - -
Phac3g04090 932 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 199 932 - -
Phac3g04090 932 MobiDBLite consensus disorder prediction 723 744 - -
Phac3g04090 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 615 695 IPR000504 GO:0003723
Phac3g04090 932 MobiDBLite consensus disorder prediction 375 397 - -
Phac3g04090 932 Gene3D - 516 601 IPR012677 -
Phac3g04090 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 439 507 IPR000504 GO:0003723
Phac3g04090 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 617 682 IPR000504 GO:0003723
Phac3g04090 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 519 587 IPR000504 GO:0003723
Phac3g04090 932 Gene3D - 363 511 IPR012677 -
Phac3g04090 932 MobiDBLite consensus disorder prediction 313 411 - -
Phac3g04090 932 Gene3D - 604 758 IPR012677 -
Phac3g04090 932 Coils Coil 414 434 - -
Phac3g04090 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 437 515 IPR000504 GO:0003723
Phac3g04090 932 MobiDBLite consensus disorder prediction 187 298 - -
Phac3g04090 932 FunFam Heterogeneous nuclear ribonucleoprotein Q 602 753 - -
Phac3g04090 932 MobiDBLite consensus disorder prediction 313 349 - -
Phac3g04090 932 MobiDBLite consensus disorder prediction 47 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04090 Phac-Chr3 40250214 40261380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04090 438 683 Eukaryotic Initiation Factors Gene Family AT2G23350 24.111 7.34e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04090 - - gmx:100819035 1356.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g04090 3 40250214 40261380 Phac3g04090 3 40250214 40261380 ECH